Annotation Detail for ANKS3
Basic Information Top
| Gene Symbol: | ANKS3 ( FLJ32345,FLJ32767,KIAA1977 ) |
|---|---|
| Gene Full Name: | ankyrin repeat and sterile alpha motif domain containing 3 |
| Band: | 16p13.3 |
| Quick Links | Entrez ID:124401; OMIM: NA; Uniprot ID:ANKS3_HUMAN; ENSEMBL ID: ENSG00000168096; HGNC ID: 29422 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.654859
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 13 / 564012 | 23 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 50 / 1939121 | 25 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 2 / 17290 | 115 |  |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 1 / 136302 | 7 |  |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 100 / 3360307 | 29 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 10 / 125680 | 79 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 1 / 29757 | 33 | |
| blood | 2 / 123478 | 16 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 41 / 1100989 | 37 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 2 / 20209 | 98 | |
| eye | 4 / 211054 | 18 | |
| heart | 0 / 89626 | 0 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 6 / 336974 | 17 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 9 / 214812 | 41 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 14 / 280825 | 49 | |
| prostate | 7 / 189345 | 36 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 1 / 210574 | 4 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 4 / 96619 | 41 | |
| testis | 11 / 330442 | 33 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 6 / 232878 | 25 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_501_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.65 ± 0.56 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.58 ± 0.3 | |
| Basal Part of Pons | 4.35 ± 0.43 | |
| Cerebellar Cortex | 4.56 ± 0.41 | |
| Cerebellar Nuclei | 4.34 ± 0.57 | |
| Claustrum | 5.02 ± 0.69 | |
| Epithalamus | 4.11 ± 0.26 | |
| Frontal Lobe | 4.2 ± 0.45 | |
| Globus Pallidus | 4.67 ± 0.36 | |
| Hypothalamus | 4.51 ± 0.42 | |
| Insula | 4.37 ± 0.34 | |
| Limbic Lobe | 4.49 ± 0.59 | |
| Mesencephalon | 4.52 ± 0.62 | |
| Myelencephalon | 4.48 ± 0.59 | |
| Occipital Lobe | 4.89 ± 0.52 | |
| Parietal Lobe | 4.52 ± 0.49 | |
| Pontine Tegmentum | 4.54 ± 0.55 | |
| Striatum | 4.38 ± 0.61 | |
| Subthalamus | 4.24 ± 0.64 | |
| Temporal Lobe | 4.44 ± 0.58 | |
| Thalamus | 4.49 ± 0.42 | |
| White Matter | 4.84 ± 0.25 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Anks3 | CB | Cerebellum | 14.71 | |
| 13.49 | | |||
| Anks3 | CTX | Cerebral cortex | 47.54 | |
| 30.32 | | |||
| Anks3 | HIP | Hippocampal region | 39.32 | |
| 39.13 | | |||
| Anks3 | HPF | Hippocampal formation | 41.71 | |
| 35.94 | | |||
| Anks3 | HY | Hypothalamus | 22.86 | |
| 15.48 | | |||
| Anks3 | LSX | Lateral septal complex | 27.54 | |
| 17.21 | | |||
| Anks3 | MB | Midbrain | 24.01 | |
| 17.88 | | |||
| Anks3 | MY | Medulla | 23.97 | |
| 20.81 | | |||
| Anks3 | OLF | Olfactory bulb | 51.19 | |
| 37.68 | | |||
| Anks3 | P | Pons | 25.05 | |
| 20.25 | | |||
| Anks3 | PAL | Pallidum | 21.28 | |
| 14.9 | | |||
| Anks3 | RHP | Retrohippocampal region | 46.07 | |
| 32.29 | | |||
| Anks3 | sAMY | Striatum-like amygdalar nuclei | 22.87 | |
| 14.46 | | |||
| Anks3 | STR | Striatum | 22.03 | |
| 13.68 | | |||
| Anks3 | STRd | Striatum dorsal region | 18.85 | |
| 11.84 | | |||
| Anks3 | STRv | Striatum ventral region | 29.9 | |
| 17.32 | | |||
| Anks3 | TH | Thalamus | 21.45 | |
| 14.15 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| ANKS3_HUMAN_2 | 15 | 2 | 16 | SELSDEASEPELLNR | PRIDE |
| PAp00032551 | 21 | 360 | 380 | AQGLSSEASVESNEDSDHACK | Peptide Atlas |