Annotation Detail for SNX20
Basic Information Top
| Gene Symbol: | SNX20 ( MGC35578,SLIC1 ) |
|---|---|
| Gene Full Name: | sorting nexin 20 |
| Band: | 16q12.1 |
| Quick Links | Entrez ID:124460; OMIM: 613281; Uniprot ID:SNX20_HUMAN; ENSEMBL ID: ENSG00000167208; HGNC ID: 30390 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.715778
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 28 / 564012 | 49 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 11 / 1939121 | 5 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 1 / 263845 | 3 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 8 / 95842 | 83 |  |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 65 / 3360307 | 19 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 3 / 123478 | 24 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 10 / 48801 | 204 |  |
| brain | 0 / 1100989 | 0 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 1 / 89626 | 11 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 28 / 91610 | 305 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 4 / 53952 | 74 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 22 / 81131 | 271 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P352469
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.1 ± 0.58 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.26 ± 0.43 | |
| Basal Part of Pons | 5 ± 0.34 | |
| Cerebellar Cortex | 5.09 ± 0.4 | |
| Cerebellar Nuclei | 5.44 ± 0.37 | |
| Claustrum | 5.63 ± 0.68 | |
| Epithalamus | 4.43 ± 0.4 | |
| Frontal Lobe | 4.88 ± 0.47 | |
| Globus Pallidus | 5.5 ± 0.57 | |
| Hypothalamus | 4.61 ± 0.57 | |
| Insula | 4.89 ± 0.38 | |
| Limbic Lobe | 4.93 ± 0.48 | |
| Mesencephalon | 4.96 ± 0.54 | |
| Myelencephalon | 5 ± 0.57 | |
| Occipital Lobe | 5.21 ± 0.47 | |
| Parietal Lobe | 4.95 ± 0.52 | |
| Pontine Tegmentum | 4.94 ± 0.66 | |
| Striatum | 4.93 ± 0.73 | |
| Subthalamus | 5.34 ± 0.69 | |
| Temporal Lobe | 4.88 ± 0.58 | |
| Thalamus | 4.97 ± 0.51 | |
| White Matter | 5.9 ± 0.18 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 9130017C17Rik | CB | Cerebellum | 3.35 | |
| 3.06 | | |||
| 9130017C17Rik | CTX | Cerebral cortex | 8.05 | |
| 5.55 | | |||
| 9130017C17Rik | HIP | Hippocampal region | 5.94 | |
| 5.33 | | |||
| 9130017C17Rik | HPF | Hippocampal formation | 10.65 | |
| 10.01 | | |||
| 9130017C17Rik | HY | Hypothalamus | 14.43 | |
| 13.26 | | |||
| 9130017C17Rik | LSX | Lateral septal complex | 2.07 | |
| 1.22 | | |||
| 9130017C17Rik | MB | Midbrain | 7.56 | |
| 7.13 | | |||
| 9130017C17Rik | MY | Medulla | 16.8 | |
| 16.46 | | |||
| 9130017C17Rik | OLF | Olfactory bulb | 48.29 | |
| 41.05 | | |||
| 9130017C17Rik | P | Pons | 16.13 | |
| 16.67 | | |||
| 9130017C17Rik | PAL | Pallidum | 10.89 | |
| 9.62 | | |||
| 9130017C17Rik | RHP | Retrohippocampal region | 18.96 | |
| 16.58 | | |||
| 9130017C17Rik | sAMY | Striatum-like amygdalar nuclei | 10.53 | |
| 7.62 | | |||
| 9130017C17Rik | STR | Striatum | 9.52 | |
| 6.89 | | |||
| 9130017C17Rik | STRd | Striatum dorsal region | 4.66 | |
| 2.96 | | |||
| 9130017C17Rik | STRv | Striatum ventral region | 26.06 | |
| 18.92 | | |||
| 9130017C17Rik | TH | Thalamus | 11.51 | |
| 8.55 | |