Annotation Detail for MSI2
Basic Information Top
| Gene Symbol: | MSI2 ( FLJ36569,MGC3245,MSI2H ) |
|---|---|
| Gene Full Name: | musashi homolog 2 (Drosophila) |
| Band: | 17q22 |
| Quick Links | Entrez ID:124540; OMIM: 607897; Uniprot ID:MSI2H_HUMAN; ENSEMBL ID: ENSG00000153944; HGNC ID: 18585 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.658922
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 2 / 62319 | 32 |  |
| fetus | 18 / 564012 | 31 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 61 / 1939121 | 31 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 |  |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 6 / 94178 | 63 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 8 / 114246 | 70 | |
| esophageal tumor | 2 / 17290 | 115 | |
| gastrointestinal tumor | 7 / 119369 | 58 | |
| germ cell tumor | 3 / 263845 | 11 | |
| glioma | 7 / 106883 | 65 | |
| head and neck tumor | 4 / 136302 | 29 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 85 / 3360307 | 25 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 5 / 104616 | 47 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 5 / 46356 | 107 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 |  |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 2 / 123478 | 16 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 31 / 1100989 | 28 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 2 / 20209 | 98 | |
| eye | 15 / 211054 | 71 | |
| heart | 2 / 89626 | 22 | |
| intestine | 8 / 234472 | 34 | |
| kidney | 7 / 211777 | 33 | |
| larynx | 2 / 24145 | 82 | |
| liver | 7 / 207743 | 33 | |
| lung | 8 / 336974 | 23 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 11 / 91610 | 120 | |
| mammary gland | 7 / 153271 | 45 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 7 / 189345 | 36 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 7 / 210574 | 33 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 6 / 96619 | 62 | |
| testis | 4 / 330442 | 12 | |
| thymus | 7 / 81131 | 86 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 4 / 52413 | 76 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_11661_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.39 ± 0.46 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.59 ± 0.15 | |
| Basal Part of Pons | 4.23 ± 0.53 | |
| Cerebellar Cortex | 4.81 ± 0.32 | |
| Cerebellar Nuclei | 3.98 ± 0.65 | |
| Claustrum | 3.91 ± 0.84 | |
| Epithalamus | 5.4 ± 0.51 | |
| Frontal Lobe | 4.16 ± 0.51 | |
| Globus Pallidus | 4.78 ± 0.73 | |
| Hypothalamus | 4.24 ± 0.56 | |
| Insula | 4.22 ± 0.29 | |
| Limbic Lobe | 4.01 ± 0.53 | |
| Mesencephalon | 4.48 ± 0.53 | |
| Myelencephalon | 4.28 ± 0.59 | |
| Occipital Lobe | 4.39 ± 0.36 | |
| Parietal Lobe | 4.35 ± 0.5 | |
| Pontine Tegmentum | 4.27 ± 0.45 | |
| Striatum | 4.57 ± 0.65 | |
| Subthalamus | 3.97 ± 0.79 | |
| Temporal Lobe | 4.16 ± 0.43 | |
| Thalamus | 4.28 ± 0.45 | |
| White Matter | 3.71 ± 0.43 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Msi2 | CB | Cerebellum | 48.81 | |
| 90.75 | | |||
| Msi2 | CTX | Cerebral cortex | 73.3 | |
| 59.91 | | |||
| Msi2 | HIP | Hippocampal region | 45.1 | |
| 59.15 | | |||
| Msi2 | HPF | Hippocampal formation | 55.9 | |
| 62.29 | | |||
| Msi2 | HY | Hypothalamus | 58.41 | |
| 51.6 | | |||
| Msi2 | LSX | Lateral septal complex | 59 | |
| 57.23 | | |||
| Msi2 | MB | Midbrain | 47.64 | |
| 51.09 | | |||
| Msi2 | MY | Medulla | 58.77 | |
| 76.47 | | |||
| Msi2 | OLF | Olfactory bulb | 81.03 | |
| 82.47 | | |||
| Msi2 | P | Pons | 60.61 | |
| 72.01 | | |||
| Msi2 | PAL | Pallidum | 61.22 | |
| 73.62 | | |||
| Msi2 | RHP | Retrohippocampal region | 70.28 | |
| 66.45 | | |||
| Msi2 | sAMY | Striatum-like amygdalar nuclei | 56.82 | |
| 51.16 | | |||
| Msi2 | STR | Striatum | 50.52 | |
| 45.06 | | |||
| Msi2 | STRd | Striatum dorsal region | 46.35 | |
| 40.89 | | |||
| Msi2 | STRv | Striatum ventral region | 56.3 | |
| 47.79 | | |||
| Msi2 | TH | Thalamus | 65.97 | |
| 71.03 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00008144 | 12 | 167 | 178 | VCEIHFHEINNK | Peptide Atlas |