AutismKB 2.0

Annotation Detail for SLC38A10


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Basic Information Top
Gene Symbol:SLC38A10 ( FLJ35718,FLJ46399,MGC15523 )
Gene Full Name: solute carrier family 38, member 10
Band: 17q25.3
Quick LinksEntrez ID:124565; OMIM: NA; Uniprot ID:S38AA_HUMAN; ENSEMBL ID: ENSG00000157637; HGNC ID: 28237
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst3 / 6231948
fetus12 / 56401221
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult114 / 193912158
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor7 / 9417874
cervical tumor0 / 343660 
chondrosarcoma16 / 82823193
colorectal tumor19 / 114246166
esophageal tumor1 / 1729057
gastrointestinal tumor6 / 11936950
germ cell tumor20 / 26384575
glioma4 / 10688337
head and neck tumor16 / 136302117
kidney tumor9 / 68959130
leukemia5 / 9584252
liver tumor1 / 9635910
lung tumor6 / 10312758
lymphoma30 / 71755418
non-neoplasia6 / 9725061
normal136 / 336030740
ovarian tumor11 / 76682143
pancreatic tumor18 / 104616172
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer2 / 10268019
retinoblastoma1 / 4635621
skin tumor27 / 124949216
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites2 / 4001549
bladder0 / 297570 
blood3 / 12347824
bone6 / 7165583
bone marrow6 / 48801122
brain17 / 110098915
cervix2 / 4817141
connective tissue12 / 14925580
ear0 / 162120 
embryonic tissue12 / 21572255
esophagus1 / 2020949
eye16 / 21105475
heart3 / 8962633
intestine26 / 234472110
kidney17 / 21177780
larynx2 / 2414582
liver2 / 2077439
lung16 / 33697447
lymph30 / 44270677
lymph node3 / 9161032
mammary gland12 / 15327178
mouth1 / 6705214
muscle4 / 10771537
nerve0 / 157680 
ovary17 / 102051166
pancreas26 / 214812121
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland6 / 16585361
placenta11 / 28082539
prostate12 / 18934563
salivary gland14 / 20155694
skin28 / 210574132
spleen4 / 5395274
stomach4 / 9661941
testis11 / 33044233
thymus3 / 8113136
thyroid2 / 4747342
tonsil1 / 1699958
trachea0 / 524130 
umbilical cord0 / 136800 
uterus6 / 23287825
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 212890_at
Cell line Expression level Expression bar
721_B_lymphoblasts166.4
Adipocyte144.4
AdrenalCortex175.3
Adrenalgland188.6
Amygdala101.25
Appendix142.85
AtrioventricularNode83.4
BDCA4+_DentriticCells518
Bonemarrow256.6
BronchialEpithelialCells75.6
CD105+_Endothelial138.05
CD14+_Monocytes518.45
CD19+_BCells(neg._sel.)285.95
CD33+_Myeloid897.15
CD34+395.35
CD4+_Tcells305.65
CD56+_NKCells584.1
CD71+_EarlyErythroid77.15
CD8+_Tcells222.9
CardiacMyocytes135.2
Caudatenucleus84.2
Cerebellum93.85
CerebellumPeduncles85.3
CiliaryGanglion79.4
CingulateCortex92.9
Colorectaladenocarcinoma177.55
DorsalRootGanglion99.45
FetalThyroid397.7
Fetalbrain103.75
Fetalliver82.55
Fetallung124.3
GlobusPallidus60.8
Heart296.1
Hypothalamus148.05
Kidney182.4
Leukemia_chronicMyelogenousK-562127.55
Leukemia_promyelocytic-HL-6072.15
Leukemialymphoblastic(MOLT-4)74.05
Liver730.35
Lung873.05
Lymphnode216.75
Lymphoma_burkitts(Daudi)151.85
Lymphoma_burkitts(Raji)119.3
MedullaOblongata81.9
OccipitalLobe72
OlfactoryBulb115.7
Ovary100.85
Pancreas192.9
PancreaticIslet287.3
ParietalLobe90.3
Pituitary298.55
Placenta450.25
Pons103.65
PrefrontalCortex145.35
Prostate426.65
Salivarygland110.95
SkeletalMuscle94.85
Skin102.2
SmoothMuscle165.55
Spinalcord122.95
SubthalamicNucleus81.9
SuperiorCervicalGanglion152.45
TemporalLobe79.3
Testis161.8
TestisGermCell160.4
TestisIntersitial118.45
TestisLeydigCell151.65
TestisSeminiferousTubule130.15
Thalamus108.35
Thymus180.4
Thyroid800.1
Tongue128.25
Tonsil132.35
Trachea157.6
TrigeminalGanglion127.2
Uterus208.25
UterusCorpus121.45
WholeBlood304.35
Wholebrain106.5
colon117.15
pineal_day167.04
pineal_night130.22
retina235.175
small_intestine166.05
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P379630
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.16 ± 0.77
Basal Forebrain3.13 ± 0.74
Basal Part of Pons2.71 ± 0.4
Cerebellar Cortex2.83 ± 0.61
Cerebellar Nuclei3.45 ± 0.85
Claustrum3.05 ± 0.67
Epithalamus2.44 ± 0.61
Frontal Lobe3.01 ± 0.74
Globus Pallidus2.88 ± 0.74
Hypothalamus2.89 ± 0.77
Insula2.87 ± 0.61
Limbic Lobe2.88 ± 0.7
Mesencephalon3.25 ± 0.61
Myelencephalon3.02 ± 0.74
Occipital Lobe2.94 ± 0.77
Parietal Lobe2.92 ± 0.66
Pontine Tegmentum2.99 ± 0.66
Striatum3.35 ± 0.76
Subthalamus3.2 ± 0.36
Temporal Lobe2.95 ± 0.68
Thalamus3.16 ± 0.63
White Matter2.9 ± 0.86
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
1810073N04RikCBCerebellum39.52
60.73
1810073N04RikCTXCerebral cortex86.93
68
1810073N04RikHIPHippocampal region49.72
75.55
1810073N04RikHPFHippocampal formation53.19
64.76
1810073N04RikHYHypothalamus87.43
76.36
1810073N04RikLSXLateral septal complex100
90.22
1810073N04RikMBMidbrain69.71
65.53
1810073N04RikMYMedulla62.06
68.88
1810073N04RikOLFOlfactory bulb91.72
84.39
1810073N04RikPPons72.63
76.6
1810073N04RikPALPallidum77.14
74.31
1810073N04RikRHPRetrohippocampal region59.65
48.85
1810073N04RiksAMYStriatum-like amygdalar nuclei97.55
80.13
1810073N04RikSTRStriatum90.23
69.63
1810073N04RikSTRdStriatum dorsal region84.67
65.09
1810073N04RikSTRvStriatum ventral region100
77.99
1810073N04RikTHThalamus86.88
80.82
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00501581 43 628 670 GGPPPGNAAGDTGQPAEDSDHGGKPPLPAEKPAPGPGLPPEPR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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