Annotation Detail for SLC43A2
Basic Information Top
| Gene Symbol: | SLC43A2 ( FLJ23848,LAT4,MGC34680 ) |
|---|---|
| Gene Full Name: | solute carrier family 43, member 2 |
| Band: | 17p13.3 |
| Quick Links | Entrez ID:124935; OMIM: 610791; Uniprot ID:LAT4_HUMAN; ENSEMBL ID: ENSG00000167703; HGNC ID: 23087 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.160550
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 9 / 564012 | 15 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 93 / 1939121 | 47 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 1 / 17290 | 57 |  |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 5 / 95842 | 52 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 135 / 3360307 | 40 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 6 / 104616 | 57 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 3 / 46356 | 64 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 8 / 123478 | 64 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 18 / 1100989 | 16 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 8 / 215722 | 37 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 7 / 211054 | 33 | |
| heart | 0 / 89626 | 0 | |
| intestine | 8 / 234472 | 34 | |
| kidney | 9 / 211777 | 42 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 12 / 336974 | 35 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 14 / 214812 | 65 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 57 / 280825 | 202 |  |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 5 / 210574 | 23 | |
| spleen | 9 / 53952 | 166 | |
| stomach | 2 / 96619 | 20 | |
| testis | 1 / 330442 | 3 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_24_P78862
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.28 ± 0.53 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.12 ± 0.44 | |
| Basal Part of Pons | 5.88 ± 0.36 | |
| Cerebellar Cortex | 5.51 ± 0.42 | |
| Cerebellar Nuclei | 5.55 ± 0.43 | |
| Claustrum | 6.01 ± 0.5 | |
| Epithalamus | 5.08 ± 0.42 | |
| Frontal Lobe | 5.33 ± 0.5 | |
| Globus Pallidus | 5.36 ± 0.42 | |
| Hypothalamus | 4.92 ± 0.64 | |
| Insula | 5.09 ± 0.34 | |
| Limbic Lobe | 5.45 ± 0.5 | |
| Mesencephalon | 5.33 ± 0.62 | |
| Myelencephalon | 5.37 ± 0.54 | |
| Occipital Lobe | 5.74 ± 0.48 | |
| Parietal Lobe | 5.42 ± 0.43 | |
| Pontine Tegmentum | 5.26 ± 0.44 | |
| Striatum | 4.96 ± 0.48 | |
| Subthalamus | 4.9 ± 0.07 | |
| Temporal Lobe | 5.29 ± 0.51 | |
| Thalamus | 5.54 ± 0.44 | |
| White Matter | 5.13 ± 0.77 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Slc43a2 | CB | Cerebellum | 55.37 | |
| 71.52 | | |||
| Slc43a2 | CTX | Cerebral cortex | 38.76 | |
| 27.15 | | |||
| Slc43a2 | HIP | Hippocampal region | 31.86 | |
| 35.22 | | |||
| Slc43a2 | HPF | Hippocampal formation | 33.1 | |
| 33.49 | | |||
| Slc43a2 | HY | Hypothalamus | 18.87 | |
| 14.95 | | |||
| Slc43a2 | LSX | Lateral septal complex | 27.45 | |
| 19.1 | | |||
| Slc43a2 | MB | Midbrain | 27.98 | |
| 26.27 | | |||
| Slc43a2 | MY | Medulla | 36.56 | |
| 44.08 | | |||
| Slc43a2 | OLF | Olfactory bulb | 39.35 | |
| 33.32 | | |||
| Slc43a2 | P | Pons | 31.81 | |
| 36.83 | | |||
| Slc43a2 | PAL | Pallidum | 18.83 | |
| 15.93 | | |||
| Slc43a2 | RHP | Retrohippocampal region | 35.19 | |
| 31.65 | | |||
| Slc43a2 | sAMY | Striatum-like amygdalar nuclei | 15.68 | |
| 10.62 | | |||
| Slc43a2 | STR | Striatum | 14.6 | |
| 10.43 | | |||
| Slc43a2 | STRd | Striatum dorsal region | 12.09 | |
| 8.98 | | |||
| Slc43a2 | STRv | Striatum ventral region | 22.22 | |
| 14.39 | | |||
| Slc43a2 | TH | Thalamus | 46.77 | |
| 43.03 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp01429612 | 10 | 1 | 10 | MAPTLATAHR | Peptide Atlas |