Annotation Detail for GGT6
Basic Information Top
| Gene Symbol: | GGT6 ( FLJ25990,FLJ90165 ) |
|---|---|
| Gene Full Name: | gamma-glutamyltransferase 6 |
| Band: | 17p13.2 |
| Quick Links | Entrez ID:124975; OMIM: 612341; Uniprot ID:GGT6_HUMAN; ENSEMBL ID: ENSG00000167741; HGNC ID: 26891 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.130749
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 2 / 564012 | 3 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 4 / 1939121 | 2 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 2 / 114246 | 17 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 19 / 3360307 | 5 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 0 / 1100989 | 0 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 3 / 211054 | 14 | |
| heart | 1 / 89626 | 11 | |
| intestine | 7 / 234472 | 29 | |
| kidney | 9 / 211777 | 42 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P66767
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.6 ± 0.73 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.35 ± 0.3 | |
| Basal Part of Pons | 3.2 ± 0.48 | |
| Cerebellar Cortex | 3.48 ± 0.44 | |
| Cerebellar Nuclei | 3.39 ± 0.61 | |
| Claustrum | 4.03 ± 0.93 | |
| Epithalamus | 2.97 ± 0.31 | |
| Frontal Lobe | 3.2 ± 0.56 | |
| Globus Pallidus | 3.82 ± 0.6 | |
| Hypothalamus | 3.25 ± 0.7 | |
| Insula | 2.98 ± 0.48 | |
| Limbic Lobe | 3.5 ± 0.62 | |
| Mesencephalon | 3.5 ± 0.7 | |
| Myelencephalon | 3.47 ± 0.57 | |
| Occipital Lobe | 3.65 ± 0.54 | |
| Parietal Lobe | 3.48 ± 0.65 | |
| Pontine Tegmentum | 3.38 ± 0.72 | |
| Striatum | 3.56 ± 0.59 | |
| Subthalamus | 2.97 ± 0.57 | |
| Temporal Lobe | 3.24 ± 0.66 | |
| Thalamus | 3.34 ± 0.59 | |
| White Matter | 4.13 ± 0.36 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ggt6 | CB | Cerebellum | 2.92 | |
| 2.89 | | |||
| Ggt6 | CTX | Cerebral cortex | 5.37 | |
| 3.61 | | |||
| Ggt6 | HIP | Hippocampal region | 1.83 | |
| 1.46 | | |||
| Ggt6 | HPF | Hippocampal formation | 1.96 | |
| 1.51 | | |||
| Ggt6 | HY | Hypothalamus | 0.41 | |
| 0.34 | | |||
| Ggt6 | LSX | Lateral septal complex | 0.12 | |
| 0.08 | | |||
| Ggt6 | MB | Midbrain | 0.64 | |
| 0.7 | | |||
| Ggt6 | MY | Medulla | 4.02 | |
| 3.9 | | |||
| Ggt6 | OLF | Olfactory bulb | 4.54 | |
| 3.94 | | |||
| Ggt6 | P | Pons | 1.92 | |
| 2.44 | | |||
| Ggt6 | PAL | Pallidum | 1.18 | |
| 0.79 | | |||
| Ggt6 | RHP | Retrohippocampal region | 2.18 | |
| 1.63 | | |||
| Ggt6 | sAMY | Striatum-like amygdalar nuclei | 2.34 | |
| 1.52 | | |||
| Ggt6 | STR | Striatum | 1.95 | |
| 1.26 | | |||
| Ggt6 | STRd | Striatum dorsal region | 1.75 | |
| 1.1 | | |||
| Ggt6 | STRv | Striatum ventral region | 2.99 | |
| 2 | | |||
| Ggt6 | TH | Thalamus | 0.52 | |
| 0.39 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00435743 | 21 | 169 | 189 | LLVGPTTLAQEGFLVDTPLAR | Peptide Atlas |