Annotation Detail for TBC1D16
Basic Information Top
| Gene Symbol: | TBC1D16 ( FLJ20748,MGC25062 ) |
|---|---|
| Gene Full Name: | TBC1 domain family, member 16 |
| Band: | 17q25.3 |
| Quick Links | Entrez ID:125058; OMIM: NA; Uniprot ID:TBC16_HUMAN; ENSEMBL ID: ENSG00000167291; HGNC ID: 28356 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.369819
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 8 / 70761 | 113 |  |
| blastocyst | 3 / 62319 | 48 |  |
| fetus | 35 / 564012 | 62 | |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 3 / 55556 | 53 | |
| adult | 100 / 1939121 | 51 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 20 / 94178 | 212 |  |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 8 / 82823 | 96 | |
| colorectal tumor | 9 / 114246 | 78 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 15 / 263845 | 56 | |
| glioma | 14 / 106883 | 130 | |
| head and neck tumor | 4 / 136302 | 29 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 8 / 103127 | 77 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 |  |
| normal | 139 / 3360307 | 41 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 8 / 104616 | 76 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 6 / 46356 | 129 | |
| skin tumor | 70 / 124949 | 560 | |
| soft tissue/muscle tissue tumor | 5 / 125191 | 39 | |
| uterine tumor | 12 / 90257 | 132 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 4 / 29757 | 134 | |
| blood | 5 / 123478 | 40 | |
| bone | 7 / 71655 | 97 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 41 / 1100989 | 37 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 17 / 215722 | 78 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 22 / 211054 | 104 | |
| heart | 11 / 89626 | 122 | |
| intestine | 18 / 234472 | 76 | |
| kidney | 12 / 211777 | 56 | |
| larynx | 1 / 24145 | 41 | |
| liver | 3 / 207743 | 14 | |
| lung | 12 / 336974 | 35 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 23 / 153271 | 150 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 13 / 214812 | 60 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 6 / 189345 | 31 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 78 / 210574 | 370 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 2 / 96619 | 20 | |
| testis | 5 / 330442 | 15 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 6 / 13680 | 438 | |
| uterus | 23 / 232878 | 98 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_1018_PI416573500
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.85 ± 0.7 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.93 ± 0.61 | |
| Basal Part of Pons | 3.48 ± 0.63 | |
| Cerebellar Cortex | 4.05 ± 0.42 | |
| Cerebellar Nuclei | 3.71 ± 0.41 | |
| Claustrum | 3.78 ± 0.68 | |
| Epithalamus | 3.24 ± 0.65 | |
| Frontal Lobe | 3.55 ± 0.7 | |
| Globus Pallidus | 3.49 ± 0.89 | |
| Hypothalamus | 3.41 ± 0.63 | |
| Insula | 3.57 ± 0.5 | |
| Limbic Lobe | 3.69 ± 0.7 | |
| Mesencephalon | 3.78 ± 0.62 | |
| Myelencephalon | 3.91 ± 0.66 | |
| Occipital Lobe | 4.17 ± 0.67 | |
| Parietal Lobe | 3.81 ± 0.54 | |
| Pontine Tegmentum | 3.75 ± 0.84 | |
| Striatum | 4.57 ± 0.69 | |
| Subthalamus | 3.23 ± 0.84 | |
| Temporal Lobe | 3.66 ± 0.63 | |
| Thalamus | 4.14 ± 0.53 | |
| White Matter | 3.83 ± 0.74 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Tbc1d16 | CB | Cerebellum | 5.46 | |
| 5.21 | | |||
| Tbc1d16 | CTX | Cerebral cortex | 1.11 | |
| 1.01 | | |||
| Tbc1d16 | HIP | Hippocampal region | 2.17 | |
| 1.93 | | |||
| Tbc1d16 | HPF | Hippocampal formation | 1.73 | |
| 1.52 | | |||
| Tbc1d16 | HY | Hypothalamus | 1.62 | |
| 1.5 | | |||
| Tbc1d16 | LSX | Lateral septal complex | 1.23 | |
| 0.84 | | |||
| Tbc1d16 | MB | Midbrain | 1.16 | |
| 1.24 | | |||
| Tbc1d16 | MY | Medulla | 1.33 | |
| 1.29 | | |||
| Tbc1d16 | OLF | Olfactory bulb | 3.59 | |
| 2.6 | | |||
| Tbc1d16 | P | Pons | 0.85 | |
| 0.64 | | |||
| Tbc1d16 | PAL | Pallidum | 4.45 | |
| 4.09 | | |||
| Tbc1d16 | RHP | Retrohippocampal region | 0.71 | |
| 0.79 | | |||
| Tbc1d16 | sAMY | Striatum-like amygdalar nuclei | 1.44 | |
| 1.12 | | |||
| Tbc1d16 | STR | Striatum | 3.65 | |
| 2.41 | | |||
| Tbc1d16 | STRd | Striatum dorsal region | 3.15 | |
| 2.04 | | |||
| Tbc1d16 | STRv | Striatum ventral region | 7.63 | |
| 4.79 | | |||
| Tbc1d16 | TH | Thalamus | 1.74 | |
| 1.27 | |