Annotation Detail for C18orf19
Basic Information Top
| Gene Symbol: | C18orf19 ( HsT2329,MGC24180 ) |
|---|---|
| Gene Full Name: | chromosome 18 open reading frame 19 |
| Band: | 18p11.21 |
| Quick Links | Entrez ID:125228; OMIM: NA; Uniprot ID:CR019_HUMAN; ENSEMBL ID: ENSG00000177150; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.13034
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 17 / 564012 | 30 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 42 / 1939121 | 21 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 2 / 17475 | 114 |  |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 77 / 3360307 | 22 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 6 / 124949 | 48 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 2 / 29757 | 67 | |
| blood | 2 / 123478 | 16 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 18 / 1100989 | 16 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 12 / 211054 | 56 | |
| heart | 5 / 89626 | 55 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 9 / 211777 | 42 | |
| larynx | 0 / 24145 | 0 | |
| liver | 4 / 207743 | 19 | |
| lung | 1 / 336974 | 2 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 3 / 20539 | 146 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 8 / 210574 | 37 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 3 / 96619 | 31 | |
| testis | 8 / 330442 | 24 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P380978
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.91 ± 0.59 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.13 ± 0.31 | |
| Basal Part of Pons | 5.42 ± 0.37 | |
| Cerebellar Cortex | 5.31 ± 0.33 | |
| Cerebellar Nuclei | 5.51 ± 0.56 | |
| Claustrum | 4.85 ± 0.85 | |
| Epithalamus | 5.13 ± 0.67 | |
| Frontal Lobe | 5.54 ± 0.38 | |
| Globus Pallidus | 5.45 ± 0.43 | |
| Hypothalamus | 5.72 ± 0.48 | |
| Insula | 5.52 ± 0.46 | |
| Limbic Lobe | 5.16 ± 0.43 | |
| Mesencephalon | 5.47 ± 0.55 | |
| Myelencephalon | 5.32 ± 0.49 | |
| Occipital Lobe | 4.96 ± 0.5 | |
| Parietal Lobe | 5.31 ± 0.41 | |
| Pontine Tegmentum | 5.35 ± 0.46 | |
| Striatum | 4.91 ± 0.44 | |
| Subthalamus | 5.75 ± 0.68 | |
| Temporal Lobe | 5.52 ± 0.33 | |
| Thalamus | 5.48 ± 0.38 | |
| White Matter | 5.73 ± 0.21 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 4933403F05Rik | CB | Cerebellum | 22.25 | |
| 37.05 | | |||
| 4933403F05Rik | CTX | Cerebral cortex | 10.07 | |
| 8.27 | | |||
| 4933403F05Rik | HIP | Hippocampal region | 21.61 | |
| 27.6 | | |||
| 4933403F05Rik | HPF | Hippocampal formation | 17.5 | |
| 19.44 | | |||
| 4933403F05Rik | HY | Hypothalamus | 9.16 | |
| 8.2 | | |||
| 4933403F05Rik | LSX | Lateral septal complex | 4.73 | |
| 3.21 | | |||
| 4933403F05Rik | MB | Midbrain | 9.74 | |
| 12.06 | | |||
| 4933403F05Rik | MY | Medulla | 21.32 | |
| 31.45 | | |||
| 4933403F05Rik | OLF | Olfactory bulb | 11 | |
| 8.64 | | |||
| 4933403F05Rik | P | Pons | 16.03 | |
| 21.04 | | |||
| 4933403F05Rik | PAL | Pallidum | 10.35 | |
| 12.58 | | |||
| 4933403F05Rik | RHP | Retrohippocampal region | 13.15 | |
| 11.49 | | |||
| 4933403F05Rik | sAMY | Striatum-like amygdalar nuclei | 4.07 | |
| 3.91 | | |||
| 4933403F05Rik | STR | Striatum | 3.13 | |
| 2.58 | | |||
| 4933403F05Rik | STRd | Striatum dorsal region | 1.96 | |
| 1.59 | | |||
| 4933403F05Rik | STRv | Striatum ventral region | 5.83 | |
| 4.52 | | |||
| 4933403F05Rik | TH | Thalamus | 8.57 | |
| 8.33 | |