Annotation Detail for TTC39C
Basic Information Top
| Gene Symbol: | TTC39C ( C18orf17,FLJ33761,FLJ90394,HsT2697 ) |
|---|---|
| Gene Full Name: | tetratricopeptide repeat domain 39C |
| Band: | 18q11.2 |
| Quick Links | Entrez ID:125488; OMIM: NA; Uniprot ID:TT39C_HUMAN; ENSEMBL ID: ENSG00000168234; HGNC ID: 26595 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.128576
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 25 / 564012 | 44 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 59 / 1939121 | 30 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 5 / 82823 | 60 |  |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 10 / 263845 | 37 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 6 / 95842 | 62 | |
| liver tumor | 9 / 96359 | 93 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 96 / 3360307 | 28 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 10 / 90257 | 110 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 7 / 123478 | 56 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 13 / 1100989 | 11 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 9 / 211054 | 42 | |
| heart | 2 / 89626 | 22 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 19 / 207743 | 91 | |
| lung | 34 / 336974 | 100 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 11 / 91610 | 120 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 1 / 210574 | 4 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 0 / 96619 | 0 | |
| testis | 6 / 330442 | 18 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 11 / 232878 | 47 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_23_P401098
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.82 ± 0.72 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.48 ± 0.67 | |
| Basal Part of Pons | 4.32 ± 0.42 | |
| Cerebellar Cortex | 4.8 ± 0.53 | |
| Cerebellar Nuclei | 4.6 ± 0.5 | |
| Claustrum | 4.28 ± 0.7 | |
| Epithalamus | 4.69 ± 0.6 | |
| Frontal Lobe | 4.7 ± 0.6 | |
| Globus Pallidus | 3.55 ± 0.96 | |
| Hypothalamus | 4.23 ± 0.39 | |
| Insula | 4.71 ± 0.6 | |
| Limbic Lobe | 5.3 ± 0.73 | |
| Mesencephalon | 4.9 ± 0.81 | |
| Myelencephalon | 4.67 ± 0.62 | |
| Occipital Lobe | 5.66 ± 0.65 | |
| Parietal Lobe | 5.03 ± 0.65 | |
| Pontine Tegmentum | 4.77 ± 0.84 | |
| Striatum | 3.9 ± 0.87 | |
| Subthalamus | 4.46 ± 0.33 | |
| Temporal Lobe | 4.95 ± 0.46 | |
| Thalamus | 4.35 ± 0.6 | |
| White Matter | 2.4 ± 1.01 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 2810439F02Rik | CB | Cerebellum | 1.96 | |
| 2.77 | | |||
| 2810439F02Rik | CTX | Cerebral cortex | 11.97 | |
| 10.57 | | |||
| 2810439F02Rik | HIP | Hippocampal region | 67.61 | |
| 100 | | |||
| 2810439F02Rik | HPF | Hippocampal formation | 52.26 | |
| 76.39 | | |||
| 2810439F02Rik | HY | Hypothalamus | 11.66 | |
| 9.65 | | |||
| 2810439F02Rik | LSX | Lateral septal complex | 12.83 | |
| 10.6 | | |||
| 2810439F02Rik | MB | Midbrain | 13.23 | |
| 13.39 | | |||
| 2810439F02Rik | MY | Medulla | 9.29 | |
| 14.08 | | |||
| 2810439F02Rik | OLF | Olfactory bulb | 75.81 | |
| 96.81 | | |||
| 2810439F02Rik | P | Pons | 12.33 | |
| 17.33 | | |||
| 2810439F02Rik | PAL | Pallidum | 27.98 | |
| 27.22 | | |||
| 2810439F02Rik | RHP | Retrohippocampal region | 21.97 | |
| 17.89 | | |||
| 2810439F02Rik | sAMY | Striatum-like amygdalar nuclei | 45 | |
| 36.84 | | |||
| 2810439F02Rik | STR | Striatum | 27.86 | |
| 21.68 | | |||
| 2810439F02Rik | STRd | Striatum dorsal region | 17.52 | |
| 13.32 | | |||
| 2810439F02Rik | STRv | Striatum ventral region | 65.46 | |
| 47.72 | | |||
| 2810439F02Rik | TH | Thalamus | 17.9 | |
| 18.29 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00539334 | 28 | 126 | 153 | LTEESLTSDAANDNHIVAEGVSEESLNR | Peptide Atlas |