Annotation Detail for C19orf28
Basic Information Top
| Gene Symbol: | C19orf28 ( MGC20700,PP3501 ) |
|---|---|
| Gene Full Name: | chromosome 19 open reading frame 28 |
| Band: | 19p13.3 |
| Quick Links | Entrez ID:126321; OMIM: NA; Uniprot ID:CS028_HUMAN; ENSEMBL ID: ENSG00000161091; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.656901
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 3 / 62319 | 48 |  |
| fetus | 14 / 564012 | 24 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 93 / 1939121 | 47 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 10 / 94178 | 106 |  |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 6 / 114246 | 52 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 25 / 263845 | 94 | |
| glioma | 8 / 106883 | 74 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 6 / 95842 | 62 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 12 / 103127 | 116 | |
| lymphoma | 4 / 71755 | 55 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 107 / 3360307 | 31 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 12 / 104616 | 114 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 7 / 102680 | 68 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 69 / 124949 | 552 |  |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 0 / 29757 | 0 | |
| blood | 5 / 123478 | 40 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 23 / 1100989 | 20 | |
| cervix | 11 / 48171 | 228 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 6 / 215722 | 27 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 13 / 211054 | 61 | |
| heart | 1 / 89626 | 11 | |
| intestine | 9 / 234472 | 38 | |
| kidney | 19 / 211777 | 89 | |
| larynx | 0 / 24145 | 0 | |
| liver | 8 / 207743 | 38 | |
| lung | 35 / 336974 | 103 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 |  |
| mammary gland | 11 / 153271 | 71 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 5 / 107715 | 46 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 9 / 102051 | 88 | |
| pancreas | 15 / 214812 | 69 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 12 / 280825 | 42 | |
| prostate | 9 / 189345 | 47 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 77 / 210574 | 365 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 0 / 96619 | 0 | |
| testis | 6 / 330442 | 18 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 220178_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 4.6 | |
| Adipocyte | 3.55 | |
| AdrenalCortex | 3.8 | |
| Adrenalgland | 3.05 | |
| Amygdala | 3.85 | |
| Appendix | 3.6 | |
| AtrioventricularNode | 2.8 | |
| BDCA4+_DentriticCells | 8.3 | |
| Bonemarrow | 3.55 | |
| BronchialEpithelialCells | 3.6 | |
| CD105+_Endothelial | 3.7 | |
| CD14+_Monocytes | 4.3 | |
| CD19+_BCells(neg._sel.) | 3.95 | |
| CD33+_Myeloid | 10.2 | |
| CD34+ | 10.3 | |
| CD4+_Tcells | 11 | |
| CD56+_NKCells | 5.3 | |
| CD71+_EarlyErythroid | 3.35 | |
| CD8+_Tcells | 7.6 | |
| CardiacMyocytes | 4.65 | |
| Caudatenucleus | 3.25 | |
| Cerebellum | 2.95 | |
| CerebellumPeduncles | 4.1 | |
| CiliaryGanglion | 2.55 | |
| CingulateCortex | 3.7 | |
| Colorectaladenocarcinoma | 4.05 | |
| DorsalRootGanglion | 2.75 | |
| FetalThyroid | 3.5 | |
| Fetalbrain | 3.65 | |
| Fetalliver | 3.05 | |
| Fetallung | 3.05 | |
| GlobusPallidus | 2.7 | |
| Heart | 4.6 | |
| Hypothalamus | 4.45 | |
| Kidney | 6.5 | |
| Leukemia_chronicMyelogenousK-562 | 3.85 | |
| Leukemia_promyelocytic-HL-60 | 3.2 | |
| Leukemialymphoblastic(MOLT-4) | 2.9 | |
| Liver | 4.75 | |
| Lung | 4 | |
| Lymphnode | 3.5 | |
| Lymphoma_burkitts(Daudi) | 4.65 | |
| Lymphoma_burkitts(Raji) | 6.1 | |
| MedullaOblongata | 3.35 | |
| OccipitalLobe | 3.25 | |
| OlfactoryBulb | 3.9 | |
| Ovary | 2.4 | |
| Pancreas | 2.95 | |
| PancreaticIslet | 3.85 | |
| ParietalLobe | 3.85 | |
| Pituitary | 4.25 | |
| Placenta | 3.8 | |
| Pons | 3.45 | |
| PrefrontalCortex | 5.1 | |
| Prostate | 5.15 | |
| Salivarygland | 2.9 | |
| SkeletalMuscle | 4.15 | |
| Skin | 2.75 | |
| SmoothMuscle | 4.45 | |
| Spinalcord | 3.9 | |
| SubthalamicNucleus | 3.3 | |
| SuperiorCervicalGanglion | 4 | |
| TemporalLobe | 3.55 | |
| Testis | 3.1 | |
| TestisGermCell | 3.05 | |
| TestisIntersitial | 3.05 | |
| TestisLeydigCell | 3.55 | |
| TestisSeminiferousTubule | 3.1 | |
| Thalamus | 3.7 | |
| Thymus | 6.6 | |
| Thyroid | 4.5 | |
| Tongue | 3.55 | |
| Tonsil | 3.55 | |
| Trachea | 3 | |
| TrigeminalGanglion | 3.55 | |
| Uterus | 3.85 | |
| UterusCorpus | 3.25 | |
| WholeBlood | 3.9 | |
| Wholebrain | 3.8 | |
| colon | 3.65 | |
| pineal_day | 4.82 | |
| pineal_night | 4.82 | |
| retina | 4.425 | |
| small_intestine | 3.5 | |
- Probe name: CUST_5335_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.5 ± 1.01 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.14 ± 0.43 | |
| Basal Part of Pons | 4.94 ± 0.69 | |
| Cerebellar Cortex | 4.19 ± 0.68 | |
| Cerebellar Nuclei | 4.18 ± 0.49 | |
| Claustrum | 3.78 ± 0.96 | |
| Epithalamus | 4.16 ± 0.93 | |
| Frontal Lobe | 5.01 ± 0.67 | |
| Globus Pallidus | 4.03 ± 0.63 | |
| Hypothalamus | 3.98 ± 0.59 | |
| Insula | 4.91 ± 0.53 | |
| Limbic Lobe | 4.87 ± 0.84 | |
| Mesencephalon | 4.61 ± 0.71 | |
| Myelencephalon | 4.6 ± 0.78 | |
| Occipital Lobe | 3.92 ± 0.96 | |
| Parietal Lobe | 4.63 ± 0.7 | |
| Pontine Tegmentum | 4.39 ± 0.61 | |
| Striatum | 3.87 ± 1 | |
| Subthalamus | 4.49 ± 0.82 | |
| Temporal Lobe | 4.98 ± 0.62 | |
| Thalamus | 4.55 ± 0.69 | |
| White Matter | 5.06 ± 0.61 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| F630110N24Rik | CB | Cerebellum | 24.27 | |
| 37.71 | | |||
| F630110N24Rik | CTX | Cerebral cortex | 22.3 | |
| 16 | | |||
| F630110N24Rik | HIP | Hippocampal region | 21.77 | |
| 23.83 | | |||
| F630110N24Rik | HPF | Hippocampal formation | 18.78 | |
| 18.2 | | |||
| F630110N24Rik | HY | Hypothalamus | 7.82 | |
| 5.62 | | |||
| F630110N24Rik | LSX | Lateral septal complex | 4.21 | |
| 2.65 | | |||
| F630110N24Rik | MB | Midbrain | 13.88 | |
| 13.18 | | |||
| F630110N24Rik | MY | Medulla | 14.47 | |
| 16.94 | | |||
| F630110N24Rik | OLF | Olfactory bulb | 17.41 | |
| 12.91 | | |||
| F630110N24Rik | P | Pons | 13.65 | |
| 14.74 | | |||
| F630110N24Rik | PAL | Pallidum | 4.64 | |
| 4.07 | | |||
| F630110N24Rik | RHP | Retrohippocampal region | 14.38 | |
| 11.17 | | |||
| F630110N24Rik | sAMY | Striatum-like amygdalar nuclei | 1.9 | |
| 1.42 | | |||
| F630110N24Rik | STR | Striatum | 2.81 | |
| 2.17 | | |||
| F630110N24Rik | STRd | Striatum dorsal region | 2.34 | |
| 1.82 | | |||
| F630110N24Rik | STRv | Striatum ventral region | 4.27 | |
| 3.38 | | |||
| F630110N24Rik | TH | Thalamus | 10.77 | |
| 10.3 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00133703 | 26 | 244 | 269 | RPHAEEPGEHTPLLAPATAQPLLLWK | Peptide Atlas |