Annotation Detail for IFFO2
Basic Information Top
| Gene Symbol: | IFFO2 ( - ) |
|---|---|
| Gene Full Name: | intermediate filament family orphan 2 |
| Band: | 1p36.13 |
| Quick Links | Entrez ID:126917; OMIM: NA; Uniprot ID:IFFO2_HUMAN; ENSEMBL ID: ENSG00000169991; HGNC ID: 27006 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.466625
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 19 / 564012 | 33 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 41 / 1939121 | 21 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 11 / 263845 | 41 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 10 / 136302 | 73 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 76 / 3360307 | 22 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 3 / 123478 | 24 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 9 / 1100989 | 8 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 7 / 211054 | 33 | |
| heart | 1 / 89626 | 11 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 7 / 24145 | 289 |  |
| liver | 1 / 207743 | 4 | |
| lung | 8 / 336974 | 23 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 13 / 280825 | 46 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 16 / 210574 | 75 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 1 / 96619 | 10 | |
| testis | 1 / 330442 | 3 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_8272_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.92 ± 0.62 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.32 ± 0.42 | |
| Basal Part of Pons | 4.09 ± 0.47 | |
| Cerebellar Cortex | 4.44 ± 0.4 | |
| Cerebellar Nuclei | 3.74 ± 0.55 | |
| Claustrum | 3.61 ± 0.93 | |
| Epithalamus | 3.72 ± 0.6 | |
| Frontal Lobe | 4.02 ± 0.6 | |
| Globus Pallidus | 3.36 ± 0.62 | |
| Hypothalamus | 3.71 ± 0.52 | |
| Insula | 3.78 ± 0.45 | |
| Limbic Lobe | 3.74 ± 0.63 | |
| Mesencephalon | 3.91 ± 0.64 | |
| Myelencephalon | 3.86 ± 0.65 | |
| Occipital Lobe | 3.7 ± 0.57 | |
| Parietal Lobe | 3.89 ± 0.64 | |
| Pontine Tegmentum | 3.8 ± 0.59 | |
| Striatum | 3.17 ± 0.59 | |
| Subthalamus | 3.84 ± 0.54 | |
| Temporal Lobe | 4.02 ± 0.49 | |
| Thalamus | 3.86 ± 0.64 | |
| White Matter | 3.29 ± 0.59 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| C79267 | CB | Cerebellum | 29.52 | |
| 46.16 | | |||
| C79267 | CTX | Cerebral cortex | 42.79 | |
| 45.17 | | |||
| C79267 | HIP | Hippocampal region | 15.14 | |
| 17.3 | | |||
| C79267 | HPF | Hippocampal formation | 27.06 | |
| 26.38 | | |||
| C79267 | HY | Hypothalamus | 28.72 | |
| 35.9 | | |||
| C79267 | LSX | Lateral septal complex | 50 | |
| 50 | | |||
| C79267 | MB | Midbrain | 26.33 | |
| 25.48 | | |||
| C79267 | MY | Medulla | 50 | |
| 50 | | |||
| C79267 | OLF | Olfactory bulb | 36.74 | |
| 41.79 | | |||
| C79267 | P | Pons | 36.99 | |
| 42.41 | | |||
| C79267 | PAL | Pallidum | 48.05 | |
| 50 | | |||
| C79267 | RHP | Retrohippocampal region | 39.06 | |
| 32.91 | | |||
| C79267 | sAMY | Striatum-like amygdalar nuclei | 29.89 | |
| 33.7 | | |||
| C79267 | STR | Striatum | 34.54 | |
| 35.33 | | |||
| C79267 | STRd | Striatum dorsal region | 39.86 | |
| 41.71 | | |||
| C79267 | STRv | Striatum ventral region | 16.63 | |
| 14.9 | | |||
| C79267 | TH | Thalamus | 19.94 | |
| 22.21 | |