Annotation Detail for CNTN1
Basic Information Top
| Gene Symbol: | CNTN1 ( F3,GP135 ) |
|---|---|
| Gene Full Name: | contactin 1 |
| Band: | 12q12 |
| Quick Links | Entrez ID:1272; OMIM: 600016; Uniprot ID:CNTN1_HUMAN; ENSEMBL ID: ENSG00000018236; HGNC ID: 2171 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.143434
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 31 / 564012 | 54 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 4 / 55556 | 71 | |
| adult | 47 / 1939121 | 24 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 7 / 263845 | 26 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 136 / 3360307 | 40 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 5 / 104616 | 47 | |
| primitive neuroectodermal tumor of the CNS | 12 / 125680 | 95 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 3 / 46356 | 64 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 83 / 1100989 | 75 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 9 / 16212 | 555 |  |
| embryonic tissue | 9 / 215722 | 41 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 10 / 211054 | 47 | |
| heart | 0 / 89626 | 0 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 1 / 336974 | 2 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 4 / 15768 | 253 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 12 / 214812 | 55 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 3 / 16585 | 180 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 6 / 330442 | 18 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 211203_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 7.5 | |
| Adipocyte | 6.1 | |
| AdrenalCortex | 6.65 | |
| Adrenalgland | 5.25 | |
| Amygdala | 11.45 | |
| Appendix | 6.35 | |
| AtrioventricularNode | 4.95 | |
| BDCA4+_DentriticCells | 6.2 | |
| Bonemarrow | 6.25 | |
| BronchialEpithelialCells | 9.05 | |
| CD105+_Endothelial | 6.2 | |
| CD14+_Monocytes | 6.6 | |
| CD19+_BCells(neg._sel.) | 6.55 | |
| CD33+_Myeloid | 7.85 | |
| CD34+ | 7.95 | |
| CD4+_Tcells | 6.55 | |
| CD56+_NKCells | 7.25 | |
| CD71+_EarlyErythroid | 5.75 | |
| CD8+_Tcells | 5.85 | |
| CardiacMyocytes | 7.95 | |
| Caudatenucleus | 5.6 | |
| Cerebellum | 14.3 | |
| CerebellumPeduncles | 29.05 | |
| CiliaryGanglion | 4.5 | |
| CingulateCortex | 8.75 | |
| Colorectaladenocarcinoma | 6.1 | |
| DorsalRootGanglion | 4.95 | |
| FetalThyroid | 5.95 | |
| Fetalbrain | 28.95 | |
| Fetalliver | 5.4 | |
| Fetallung | 5.05 | |
| GlobusPallidus | 5.6 | |
| Heart | 8.2 | |
| Hypothalamus | 8.3 | |
| Kidney | 5.1 | |
| Leukemia_chronicMyelogenousK-562 | 5.55 | |
| Leukemia_promyelocytic-HL-60 | 5.5 | |
| Leukemialymphoblastic(MOLT-4) | 4.9 | |
| Liver | 8.25 | |
| Lung | 6.7 | |
| Lymphnode | 5.3 | |
| Lymphoma_burkitts(Daudi) | 7.95 | |
| Lymphoma_burkitts(Raji) | 8.65 | |
| MedullaOblongata | 6.85 | |
| OccipitalLobe | 13.5 | |
| OlfactoryBulb | 5 | |
| Ovary | 4.15 | |
| Pancreas | 4.95 | |
| PancreaticIslet | 21.85 | |
| ParietalLobe | 8.55 | |
| Pituitary | 7.35 | |
| Placenta | 6.35 | |
| Pons | 6.95 | |
| PrefrontalCortex | 15.8 | |
| Prostate | 7.15 | |
| Salivarygland | 5.3 | |
| SkeletalMuscle | 7.7 | |
| Skin | 4.9 | |
| SmoothMuscle | 6.9 | |
| Spinalcord | 7.2 | |
| SubthalamicNucleus | 10.2 | |
| SuperiorCervicalGanglion | 11.3 | |
| TemporalLobe | 6.5 | |
| Testis | 5.25 | |
| TestisGermCell | 5.1 | |
| TestisIntersitial | 5.7 | |
| TestisLeydigCell | 6.15 | |
| TestisSeminiferousTubule | 5.25 | |
| Thalamus | 8.55 | |
| Thymus | 4.8 | |
| Thyroid | 7.55 | |
| Tongue | 6.15 | |
| Tonsil | 5.95 | |
| Trachea | 5.15 | |
| TrigeminalGanglion | 6.3 | |
| Uterus | 5 | |
| UterusCorpus | 5.65 | |
| WholeBlood | 6.65 | |
| Wholebrain | 5.1 | |
| colon | 6.05 | |
| pineal_day | 57.14 | |
| pineal_night | 54.08 | |
| retina | 7.425 | |
| small_intestine | 5.9 | |
- Probe name: CUST_11199_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 9.39 ± 0.21 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.78 ± 0.25 | |
| Basal Part of Pons | 9.18 ± 0.2 | |
| Cerebellar Cortex | 9.61 ± 0.12 | |
| Cerebellar Nuclei | 8.84 ± 0.28 | |
| Claustrum | 9.51 ± 0.24 | |
| Epithalamus | 9.2 ± 0.22 | |
| Frontal Lobe | 9.36 ± 0.33 | |
| Globus Pallidus | 8.99 ± 0.2 | |
| Hypothalamus | 9.11 ± 0.34 | |
| Insula | 9.47 ± 0.17 | |
| Limbic Lobe | 9.6 ± 0.27 | |
| Mesencephalon | 9.28 ± 0.55 | |
| Myelencephalon | 9.26 ± 0.42 | |
| Occipital Lobe | 9.08 ± 0.35 | |
| Parietal Lobe | 9.26 ± 0.3 | |
| Pontine Tegmentum | 9.2 ± 0.37 | |
| Striatum | 8.43 ± 0.3 | |
| Subthalamus | 9.09 ± 0.09 | |
| Temporal Lobe | 9.44 ± 0.23 | |
| Thalamus | 9.18 ± 0.28 | |
| White Matter | 8.02 ± 0.2 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Cntn1 | CB | Cerebellum | 14.83 | |
| 16.84 | | |||
| Cntn1 | CTX | Cerebral cortex | 41.04 | |
| 37.45 | | |||
| Cntn1 | HIP | Hippocampal region | 71.45 | |
| 77.39 | | |||
| Cntn1 | HPF | Hippocampal formation | 73.12 | |
| 74.85 | | |||
| Cntn1 | HY | Hypothalamus | 31.22 | |
| 27.46 | | |||
| Cntn1 | LSX | Lateral septal complex | 6.97 | |
| 7.07 | | |||
| Cntn1 | MB | Midbrain | 19.77 | |
| 21.3 | | |||
| Cntn1 | MY | Medulla | 28.79 | |
| 36.09 | | |||
| Cntn1 | OLF | Olfactory bulb | 82.29 | |
| 64.8 | | |||
| Cntn1 | P | Pons | 29.33 | |
| 35.16 | | |||
| Cntn1 | PAL | Pallidum | 32.76 | |
| 40.72 | | |||
| Cntn1 | RHP | Retrohippocampal region | 76.1 | |
| 70.62 | | |||
| Cntn1 | sAMY | Striatum-like amygdalar nuclei | 36.02 | |
| 28.6 | | |||
| Cntn1 | STR | Striatum | 14.87 | |
| 14.65 | | |||
| Cntn1 | STRd | Striatum dorsal region | 9.73 | |
| 11.05 | | |||
| Cntn1 | STRv | Striatum ventral region | 23.44 | |
| 20.55 | | |||
| Cntn1 | TH | Thalamus | 39.28 | |
| 39.7 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00068613 | 19 | 142 | 160 | GMVLLCDPPYHFPDDLSYR | Peptide Atlas |