Annotation Detail for ARHGEF19
Basic Information Top
| Gene Symbol: | ARHGEF19 ( FLJ33962,RP4-733M16.1,WGEF ) |
|---|---|
| Gene Full Name: | Rho guanine nucleotide exchange factor (GEF) 19 |
| Band: | 1p36.13 |
| Quick Links | Entrez ID:128272; OMIM: 612496; Uniprot ID:ARHGJ_HUMAN; ENSEMBL ID: ENSG00000142632; HGNC ID: 26604 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.591532
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 5 / 62319 | 80 |  |
| fetus | 9 / 564012 | 15 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 31 / 1939121 | 15 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 3 / 34366 | 87 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 6 / 119369 | 50 | |
| germ cell tumor | 8 / 263845 | 30 | |
| glioma | 5 / 106883 | 46 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 1 / 96359 | 10 |  |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 4 / 71755 | 55 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 36 / 3360307 | 10 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 5 / 104616 | 47 | |
| primitive neuroectodermal tumor of the CNS | 15 / 125680 | 119 | |
| prostate cancer | 6 / 102680 | 58 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 4 / 40015 | 99 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 6 / 1100989 | 5 | |
| cervix | 4 / 48171 | 83 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 7 / 215722 | 32 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 4 / 89626 | 44 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 3 / 336974 | 8 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 8 / 102051 | 78 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 11 / 189345 | 58 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 2 / 330442 | 6 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_9365_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.29 ± 0.99 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.68 ± 0.25 | |
| Basal Part of Pons | 1.35 ± 0.34 | |
| Cerebellar Cortex | 1.65 ± 0.75 | |
| Cerebellar Nuclei | 2.09 ± 0.81 | |
| Claustrum | 2.68 ± 0.76 | |
| Epithalamus | 1.55 ± 0.69 | |
| Frontal Lobe | 1.62 ± 0.65 | |
| Globus Pallidus | 2.15 ± 0.33 | |
| Hypothalamus | 1.76 ± 0.62 | |
| Insula | 1.48 ± 0.4 | |
| Limbic Lobe | 1.78 ± 0.69 | |
| Mesencephalon | 1.9 ± 0.65 | |
| Myelencephalon | 1.82 ± 0.64 | |
| Occipital Lobe | 1.74 ± 0.65 | |
| Parietal Lobe | 1.74 ± 0.76 | |
| Pontine Tegmentum | 1.83 ± 0.7 | |
| Striatum | 2.08 ± 0.66 | |
| Subthalamus | 1.91 ± 0.7 | |
| Temporal Lobe | 1.68 ± 0.68 | |
| Thalamus | 1.75 ± 0.64 | |
| White Matter | 2.11 ± 0.17 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Arhgef19 | CB | Cerebellum | 8.16 | |
| 11.22 | | |||
| Arhgef19 | CTX | Cerebral cortex | 1.75 | |
| 1.41 | | |||
| Arhgef19 | HIP | Hippocampal region | 1.52 | |
| 1.45 | | |||
| Arhgef19 | HPF | Hippocampal formation | 2.53 | |
| 2.44 | | |||
| Arhgef19 | HY | Hypothalamus | 0.84 | |
| 0.73 | | |||
| Arhgef19 | LSX | Lateral septal complex | 0.54 | |
| 0.39 | | |||
| Arhgef19 | MB | Midbrain | 0.76 | |
| 1.3 | | |||
| Arhgef19 | MY | Medulla | 2.66 | |
| 3.35 | | |||
| Arhgef19 | OLF | Olfactory bulb | 1.54 | |
| 2.15 | | |||
| Arhgef19 | P | Pons | 2.71 | |
| 4.33 | | |||
| Arhgef19 | PAL | Pallidum | 0.69 | |
| 0.68 | | |||
| Arhgef19 | RHP | Retrohippocampal region | 4.34 | |
| 3.99 | | |||
| Arhgef19 | sAMY | Striatum-like amygdalar nuclei | 0.55 | |
| 0.52 | | |||
| Arhgef19 | STR | Striatum | 1.06 | |
| 0.87 | | |||
| Arhgef19 | STRd | Striatum dorsal region | 1.41 | |
| 0.99 | | |||
| Arhgef19 | STRv | Striatum ventral region | 0.65 | |
| 0.82 | | |||
| Arhgef19 | TH | Thalamus | 0.95 | |
| 0.9 | |