AutismKB 2.0

Annotation Detail for TSHZ2


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Basic Information Top
Gene Symbol:TSHZ2 ( C20orf17,DKFZp686K2480,FLJ33887,OVC10-2,TSH2,ZABC2,ZNF218 )
Gene Full Name: teashirt zinc finger homeobox 2
Band: 20q13.2
Quick LinksEntrez ID:128553; OMIM: NA; Uniprot ID:TSH2_HUMAN; ENSEMBL ID: ENSG00000182463,ENSG00000227164; HGNC ID: 13010
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus4 / 5640127
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult25 / 193912112
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor1 / 2638453
glioma1 / 1068839
head and neck tumor16 / 136302117
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal31 / 33603079
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain6 / 11009895
cervix0 / 481710 
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye2 / 2110549
heart0 / 896260 
intestine0 / 2344720 
kidney1 / 2117774
larynx0 / 241450 
liver1 / 2077434
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland10 / 15327165
mouth16 / 67052238
muscle1 / 1077159
nerve0 / 157680 
ovary0 / 1020510 
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis4 / 33044212
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus3 / 23287812
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 220213_at
Cell line Expression level Expression bar
721_B_lymphoblasts17.45
Adipocyte18.2
AdrenalCortex26.4
Adrenalgland17.25
Amygdala17.55
Appendix24.7
AtrioventricularNode21.5
BDCA4+_DentriticCells16.15
Bonemarrow17.95
BronchialEpithelialCells16.45
CD105+_Endothelial16.85
CD14+_Monocytes18.65
CD19+_BCells(neg._sel.)18.05
CD33+_Myeloid23.45
CD34+20.1
CD4+_Tcells16.8
CD56+_NKCells21.05
CD71+_EarlyErythroid14.65
CD8+_Tcells14.85
CardiacMyocytes21.7
Caudatenucleus20.85
Cerebellum19.35
CerebellumPeduncles25
CiliaryGanglion19.05
CingulateCortex27.3
Colorectaladenocarcinoma18.25
DorsalRootGanglion19.25
FetalThyroid17.6
Fetalbrain18.25
Fetalliver17.05
Fetallung14.3
GlobusPallidus17.85
Heart29.1
Hypothalamus19.3
Kidney24.3
Leukemia_chronicMyelogenousK-56215.95
Leukemia_promyelocytic-HL-6015.1
Leukemialymphoblastic(MOLT-4)14.75
Liver25.65
Lung19.35
Lymphnode15.65
Lymphoma_burkitts(Daudi)24.8
Lymphoma_burkitts(Raji)24.85
MedullaOblongata16.8
OccipitalLobe16.5
OlfactoryBulb14.35
Ovary23.55
Pancreas15.15
PancreaticIslet21.55
ParietalLobe22.15
Pituitary25
Placenta18.1
Pons22.6
PrefrontalCortex19.3
Prostate20.55
Salivarygland19.45
SkeletalMuscle29.5
Skin18.6
SmoothMuscle20.6
Spinalcord24.7
SubthalamicNucleus17.7
SuperiorCervicalGanglion34.25
TemporalLobe16.85
Testis16.3
TestisGermCell15.35
TestisIntersitial15.65
TestisLeydigCell23.4
TestisSeminiferousTubule23.55
Thalamus18.95
Thymus13.2
Thyroid18.5
Tongue21.7
Tonsil18.8
Trachea20.6
TrigeminalGanglion26.55
Uterus14.3
UterusCorpus17.2
WholeBlood19.1
Wholebrain13.95
colon17.15
pineal_day21.02
pineal_night20.7
retina21.85
small_intestine16.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_829_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.68 ± 0.67
Basal Forebrain3.43 ± 0.47
Basal Part of Pons3.1 ± 0.68
Cerebellar Cortex3.01 ± 0.67
Cerebellar Nuclei3.47 ± 0.55
Claustrum3.76 ± 0.7
Epithalamus3.65 ± 0.52
Frontal Lobe3.28 ± 0.65
Globus Pallidus4.33 ± 0.47
Hypothalamus3.64 ± 0.56
Insula3.75 ± 0.68
Limbic Lobe3.74 ± 0.98
Mesencephalon3.47 ± 0.79
Myelencephalon3.53 ± 0.71
Occipital Lobe3.26 ± 1.02
Parietal Lobe3.91 ± 0.67
Pontine Tegmentum3.7 ± 0.8
Striatum3.16 ± 0.96
Subthalamus3.28 ± 0.34
Temporal Lobe3.84 ± 0.6
Thalamus3.52 ± 0.74
White Matter3.1 ± 1.08
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Tshz2CBCerebellum1.65
1.97
Tshz2CTXCerebral cortex5.02
3.28
Tshz2HIPHippocampal region1.25
1.19
Tshz2HPFHippocampal formation6.93
5.33
Tshz2HYHypothalamus4.46
3.13
Tshz2LSXLateral septal complex3.58
2.24
Tshz2MBMidbrain3.51
2.92
Tshz2MYMedulla6.74
6.86
Tshz2OLFOlfactory bulb7.82
5.6
Tshz2PPons6.6
5.73
Tshz2PALPallidum3.06
2.12
Tshz2RHPRetrohippocampal region16.3
10.91
Tshz2sAMYStriatum-like amygdalar nuclei3.08
2.07
Tshz2STRStriatum1.3
0.86
Tshz2STRdStriatum dorsal region0.71
0.49
Tshz2STRvStriatum ventral region1.18
0.73
Tshz2THThalamus3.92
2.75
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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