Annotation Detail for C22orf39
Basic Information Top
| Gene Symbol: | C22orf39 ( DKFZp686I08210,MGC74441 ) |
|---|---|
| Gene Full Name: | chromosome 22 open reading frame 39 |
| Band: | 22q11.21 |
| Quick Links | Entrez ID:128977; OMIM: NA; Uniprot ID:CV039_HUMAN; ENSEMBL ID: ENSG00000100084,ENSG00000242259; HGNC ID: 27012 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.659565
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 9 / 564012 | 15 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 50 / 1939121 | 25 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 17 / 263845 | 64 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 5 / 97250 | 51 | |
| normal | 102 / 3360307 | 30 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 11 / 125680 | 87 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 42 / 1100989 | 38 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 5 / 211054 | 23 | |
| heart | 1 / 89626 | 11 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 12 / 211777 | 56 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 11 / 336974 | 32 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 3 / 67052 | 44 | |
| muscle | 6 / 107715 | 55 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 2 / 20539 | 97 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 9 / 280825 | 32 | |
| prostate | 10 / 189345 | 52 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 2 / 96619 | 20 | |
| testis | 6 / 330442 | 18 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_24_P922357
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.05 ± 0.58 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.96 ± 0.14 | |
| Basal Part of Pons | 6.38 ± 0.3 | |
| Cerebellar Cortex | 6.02 ± 0.29 | |
| Cerebellar Nuclei | 6.3 ± 0.31 | |
| Claustrum | 6.01 ± 0.49 | |
| Epithalamus | 6.01 ± 0.2 | |
| Frontal Lobe | 6.28 ± 0.33 | |
| Globus Pallidus | 5.92 ± 0.51 | |
| Hypothalamus | 6.16 ± 0.34 | |
| Insula | 6.49 ± 0.29 | |
| Limbic Lobe | 6.14 ± 0.5 | |
| Mesencephalon | 6.05 ± 0.49 | |
| Myelencephalon | 6.07 ± 0.49 | |
| Occipital Lobe | 5.63 ± 0.51 | |
| Parietal Lobe | 6.16 ± 0.34 | |
| Pontine Tegmentum | 6.02 ± 0.45 | |
| Striatum | 5.55 ± 0.53 | |
| Subthalamus | 6.51 ± 0.05 | |
| Temporal Lobe | 6.32 ± 0.33 | |
| Thalamus | 6.09 ± 0.42 | |
| White Matter | 5.19 ± 0.32 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 2510002D24Rik | CB | Cerebellum | 24.18 | |
| 27.96 | | |||
| 2510002D24Rik | CTX | Cerebral cortex | 32.1 | |
| 24.26 | | |||
| 2510002D24Rik | HIP | Hippocampal region | 24 | |
| 28.28 | | |||
| 2510002D24Rik | HPF | Hippocampal formation | 24.79 | |
| 24.95 | | |||
| 2510002D24Rik | HY | Hypothalamus | 12.79 | |
| 11.19 | | |||
| 2510002D24Rik | LSX | Lateral septal complex | 15.25 | |
| 12.86 | | |||
| 2510002D24Rik | MB | Midbrain | 16.83 | |
| 15.19 | | |||
| 2510002D24Rik | MY | Medulla | 16.2 | |
| 15.85 | | |||
| 2510002D24Rik | OLF | Olfactory bulb | 28 | |
| 20.54 | | |||
| 2510002D24Rik | P | Pons | 12.72 | |
| 13.01 | | |||
| 2510002D24Rik | PAL | Pallidum | 17.58 | |
| 15.82 | | |||
| 2510002D24Rik | RHP | Retrohippocampal region | 25.84 | |
| 20.27 | | |||
| 2510002D24Rik | sAMY | Striatum-like amygdalar nuclei | 8.03 | |
| 5.42 | | |||
| 2510002D24Rik | STR | Striatum | 12.84 | |
| 9.68 | | |||
| 2510002D24Rik | STRd | Striatum dorsal region | 8.57 | |
| 6.55 | | |||
| 2510002D24Rik | STRv | Striatum ventral region | 27.62 | |
| 19.3 | | |||
| 2510002D24Rik | TH | Thalamus | 19.79 | |
| 17.31 | |