Annotation Detail for SGSM1
Basic Information Top
| Gene Symbol: | SGSM1 ( KIAA1941,MGC133298,RUTBC2 ) |
|---|---|
| Gene Full Name: | small G protein signaling modulator 1 |
| Band: | 22q11.23 |
| Quick Links | Entrez ID:129049; OMIM: 611417; Uniprot ID:SGSM1_HUMAN; ENSEMBL ID: ENSG00000167037; HGNC ID: 29410 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.474397
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 4 / 564012 | 7 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 26 / 1939121 | 13 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 38 / 3360307 | 11 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 20 / 1100989 | 18 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 0 / 89626 | 0 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 10 / 336974 | 29 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_32_P201417
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.49 ± 0.29 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.73 ± 0.21 | |
| Basal Part of Pons | 7.43 ± 0.25 | |
| Cerebellar Cortex | 7.55 ± 0.17 | |
| Cerebellar Nuclei | 7.14 ± 0.39 | |
| Claustrum | 7.24 ± 0.46 | |
| Epithalamus | 7.33 ± 0.3 | |
| Frontal Lobe | 7.32 ± 0.39 | |
| Globus Pallidus | 6.05 ± 0.42 | |
| Hypothalamus | 7.9 ± 0.44 | |
| Insula | 7.5 ± 0.27 | |
| Limbic Lobe | 7.44 ± 0.56 | |
| Mesencephalon | 7.46 ± 0.65 | |
| Myelencephalon | 7.26 ± 0.61 | |
| Occipital Lobe | 7 ± 0.53 | |
| Parietal Lobe | 7.3 ± 0.46 | |
| Pontine Tegmentum | 7.16 ± 0.61 | |
| Striatum | 6.49 ± 0.68 | |
| Subthalamus | 7.34 ± 0.5 | |
| Temporal Lobe | 7.35 ± 0.4 | |
| Thalamus | 6.74 ± 0.57 | |
| White Matter | 5.91 ± 0.66 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Rutbc2 | CB | Cerebellum | 32.99 |  |
| 45.96 | | |||
| Rutbc2 | CTX | Cerebral cortex | 100 | |
| 97.75 | | |||
| Rutbc2 | HIP | Hippocampal region | 37.38 | |
| 55.53 | | |||
| Rutbc2 | HPF | Hippocampal formation | 62.85 | |
| 77.83 | | |||
| Rutbc2 | HY | Hypothalamus | 94.45 | |
| 95.19 | | |||
| Rutbc2 | LSX | Lateral septal complex | 100 | |
| 100 | | |||
| Rutbc2 | MB | Midbrain | 63.99 | |
| 63.7 | | |||
| Rutbc2 | MY | Medulla | 47.71 | |
| 60.59 | | |||
| Rutbc2 | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| Rutbc2 | P | Pons | 56.83 | |
| 68.18 | | |||
| Rutbc2 | PAL | Pallidum | 75.99 | |
| 80.25 | | |||
| Rutbc2 | RHP | Retrohippocampal region | 91.58 | |
| 94.55 | | |||
| Rutbc2 | sAMY | Striatum-like amygdalar nuclei | 98.44 | |
| 95.54 | | |||
| Rutbc2 | STR | Striatum | 57.97 | |
| 49.09 | | |||
| Rutbc2 | STRd | Striatum dorsal region | 32.87 | |
| 25.42 | | |||
| Rutbc2 | STRv | Striatum ventral region | 72.75 | |
| 55.28 | | |||
| Rutbc2 | TH | Thalamus | 54.93 | |
| 51.69 | |