Annotation Detail for BBS5
Basic Information Top
| Gene Symbol: | BBS5 ( - ) |
|---|---|
| Gene Full Name: | Bardet-Biedl syndrome 5 |
| Band: | 2q31.1 |
| Quick Links | Entrez ID:129880; OMIM: 603650; Uniprot ID:BBS5_HUMAN; ENSEMBL ID: ENSG00000163093,ENSG00000251569; HGNC ID: 970 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.233398
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 10 / 564012 | 17 | |
| neonate | 0 / 31097 | 0 | |
| infant | 2 / 23620 | 84 |  |
| juvenile | 0 / 55556 | 0 | |
| adult | 15 / 1939121 | 7 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 8 / 263845 | 30 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 48 / 3360307 | 14 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 16 / 1100989 | 14 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 1 / 89626 | 11 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 2 / 336974 | 5 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 10 / 330442 | 30 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P5785
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.05 ± 0.36 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.84 ± 0.07 | |
| Basal Part of Pons | 7.08 ± 0.3 | |
| Cerebellar Cortex | 6.83 ± 0.25 | |
| Cerebellar Nuclei | 6.82 ± 0.35 | |
| Claustrum | 7 ± 0.32 | |
| Epithalamus | 7.56 ± 0.65 | |
| Frontal Lobe | 7 ± 0.3 | |
| Globus Pallidus | 6.88 ± 0.33 | |
| Hypothalamus | 6.9 ± 0.18 | |
| Insula | 7.15 ± 0.34 | |
| Limbic Lobe | 7.21 ± 0.28 | |
| Mesencephalon | 7.04 ± 0.34 | |
| Myelencephalon | 7.01 ± 0.37 | |
| Occipital Lobe | 7.21 ± 0.34 | |
| Parietal Lobe | 7.12 ± 0.27 | |
| Pontine Tegmentum | 7.01 ± 0.29 | |
| Striatum | 7.1 ± 0.35 | |
| Subthalamus | 6.86 ± 0.17 | |
| Temporal Lobe | 7.06 ± 0.27 | |
| Thalamus | 6.96 ± 0.22 | |
| White Matter | 6.5 ± 0.59 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Bbs5 | CB | Cerebellum | 5.73 | |
| 6.35 | | |||
| Bbs5 | CTX | Cerebral cortex | 12.34 | |
| 8.06 | | |||
| Bbs5 | HIP | Hippocampal region | 5.97 | |
| 5.42 | | |||
| Bbs5 | HPF | Hippocampal formation | 5.29 | |
| 4.3 | | |||
| Bbs5 | HY | Hypothalamus | 5.92 | |
| 4.37 | | |||
| Bbs5 | LSX | Lateral septal complex | 8.13 | |
| 4.63 | | |||
| Bbs5 | MB | Midbrain | 8.32 | |
| 7.02 | | |||
| Bbs5 | MY | Medulla | 8.92 | |
| 8.68 | | |||
| Bbs5 | OLF | Olfactory bulb | 20.14 | |
| 15.09 | | |||
| Bbs5 | P | Pons | 12.43 | |
| 12.99 | | |||
| Bbs5 | PAL | Pallidum | 4.8 | |
| 3.43 | | |||
| Bbs5 | RHP | Retrohippocampal region | 3.96 | |
| 2.61 | | |||
| Bbs5 | sAMY | Striatum-like amygdalar nuclei | 4.67 | |
| 2.75 | | |||
| Bbs5 | STR | Striatum | 5.29 | |
| 3.42 | | |||
| Bbs5 | STRd | Striatum dorsal region | 3.49 | |
| 2.49 | | |||
| Bbs5 | STRv | Striatum ventral region | 10.55 | |
| 6.11 | | |||
| Bbs5 | TH | Thalamus | 7.46 | |
| 5.48 | |