Annotation Detail for COL12A1
Basic Information Top
| Gene Symbol: | COL12A1 ( BA209D8.1,COL12A1L,DJ234P15.1 ) |
|---|---|
| Gene Full Name: | collagen, type XII, alpha 1 |
| Band: | 6q13-q14.1 |
| Quick Links | Entrez ID:1303; OMIM: 120320; Uniprot ID:COCA1_HUMAN; ENSEMBL ID: ENSG00000111799; HGNC ID: 2188 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.101302
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 5 / 70761 | 70 |  |
| blastocyst | 2 / 62319 | 32 |  |
| fetus | 59 / 564012 | 104 | |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 116 / 1939121 | 59 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 3 / 17475 | 171 | |
| breast (mammary gland) tumor | 7 / 94178 | 74 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 23 / 82823 | 277 |  |
| colorectal tumor | 6 / 114246 | 52 | |
| esophageal tumor | 2 / 17290 | 115 | |
| gastrointestinal tumor | 7 / 119369 | 58 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 7 / 136302 | 51 | |
| kidney tumor | 6 / 68959 | 87 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 1 / 96359 | 10 |  |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 10 / 97250 | 102 | |
| normal | 182 / 3360307 | 54 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 4 / 104616 | 38 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 6 / 125191 | 47 | |
| uterine tumor | 16 / 90257 | 177 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 2 / 13106 | 152 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 4 / 29757 | 134 | |
| blood | 0 / 123478 | 0 | |
| bone | 32 / 71655 | 446 | |
| bone marrow | 15 / 48801 | 307 | |
| brain | 10 / 1100989 | 9 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 22 / 149255 | 147 | |
| ear | 8 / 16212 | 493 | |
| embryonic tissue | 17 / 215722 | 78 | |
| esophagus | 4 / 20209 | 197 | |
| eye | 20 / 211054 | 94 | |
| heart | 10 / 89626 | 111 | |
| intestine | 15 / 234472 | 63 | |
| kidney | 11 / 211777 | 51 | |
| larynx | 2 / 24145 | 82 | |
| liver | 3 / 207743 | 14 | |
| lung | 16 / 336974 | 47 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 18 / 153271 | 117 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 10 / 214812 | 46 | |
| parathyroid | 3 / 20539 | 146 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 5 / 210574 | 23 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 7 / 96619 | 72 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 4 / 47473 | 84 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 25 / 232878 | 107 | |
| vascular | 5 / 51780 | 96 | |
Microarray in - Probe name: A_24_P291814
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.56 ± 0.65 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.53 ± 0.86 | |
| Basal Part of Pons | 2.91 ± 0.44 | |
| Cerebellar Cortex | 3.3 ± 0.64 | |
| Cerebellar Nuclei | 3.6 ± 0.39 | |
| Claustrum | 3.71 ± 0.76 | |
| Epithalamus | 3.22 ± 0.9 | |
| Frontal Lobe | 3.91 ± 0.65 | |
| Globus Pallidus | 4.1 ± 0.81 | |
| Hypothalamus | 3.55 ± 0.86 | |
| Insula | 3.65 ± 0.43 | |
| Limbic Lobe | 3.85 ± 0.88 | |
| Mesencephalon | 4.39 ± 0.9 | |
| Myelencephalon | 3.85 ± 0.81 | |
| Occipital Lobe | 3.82 ± 0.89 | |
| Parietal Lobe | 3.99 ± 0.7 | |
| Pontine Tegmentum | 3.97 ± 0.74 | |
| Striatum | 2.56 ± 1.23 | |
| Subthalamus | 3.84 ± 0.21 | |
| Temporal Lobe | 4.11 ± 0.44 | |
| Thalamus | 3.75 ± 0.58 | |
| White Matter | 2.76 ± 1 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Col12a1 | CB | Cerebellum | 10.13 | |
| 11.69 | | |||
| Col12a1 | CTX | Cerebral cortex | 20.07 | |
| 14.41 | | |||
| Col12a1 | HIP | Hippocampal region | 8.92 | |
| 10.57 | | |||
| Col12a1 | HPF | Hippocampal formation | 8.25 | |
| 8.47 | | |||
| Col12a1 | HY | Hypothalamus | 3.26 | |
| 2.57 | | |||
| Col12a1 | LSX | Lateral septal complex | 2.21 | |
| 1.84 | | |||
| Col12a1 | MB | Midbrain | 3.4 | |
| 3.62 | | |||
| Col12a1 | MY | Medulla | 10.2 | |
| 10.25 | | |||
| Col12a1 | OLF | Olfactory bulb | 10.27 | |
| 8.63 | | |||
| Col12a1 | P | Pons | 8.13 | |
| 7.71 | | |||
| Col12a1 | PAL | Pallidum | 1.82 | |
| 1.53 | | |||
| Col12a1 | RHP | Retrohippocampal region | 7.34 | |
| 5.9 | | |||
| Col12a1 | sAMY | Striatum-like amygdalar nuclei | 4.94 | |
| 3.36 | | |||
| Col12a1 | STR | Striatum | 3.12 | |
| 2.4 | | |||
| Col12a1 | STRd | Striatum dorsal region | 2.59 | |
| 2.01 | | |||
| Col12a1 | STRv | Striatum ventral region | 3.23 | |
| 2.31 | | |||
| Col12a1 | TH | Thalamus | 8.33 | |
| 7.81 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| COCA1_HUMAN_1273 | 14 | 1273 | 1286 | GGNTLTGMALNFIR | PRIDE |
| COCA1_HUMAN_2846 | 43 | 2846 | 2888 | DGAMGPRGPPGPPGSPGSPGVTGPSGKPGKPGDHGRPGPSGLK | PRIDE |