AutismKB 2.0

Annotation Detail for COL13A1


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Basic Information Top
Gene Symbol:COL13A1 ( COLXIIIA1,FLJ42485 )
Gene Full Name: collagen, type XIII, alpha 1
Band: 10q22.1
Quick LinksEntrez ID:1305; OMIM: 120350; Uniprot ID:CODA1_HUMAN; ENSEMBL ID: ENSG00000197467; HGNC ID: 2190
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst2 / 6231932
fetus8 / 56401214
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult13 / 19391216
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor2 / 6895929
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal35 / 336030710
ovarian tumor5 / 7668265
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer2 / 10268019
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone3 / 7165541
bone marrow0 / 488010 
brain10 / 11009899
cervix0 / 481710 
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue8 / 21572237
esophagus0 / 202090 
eye1 / 2110544
heart0 / 896260 
intestine1 / 2344724
kidney4 / 21177718
larynx0 / 241450 
liver0 / 2077430 
lung1 / 3369742
lymph0 / 442700 
lymph node0 / 916100 
mammary gland1 / 1532716
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary7 / 10205168
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate1 / 1893455
salivary gland0 / 201550 
skin2 / 2105749
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 211809_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.3
Adipocyte6.75
AdrenalCortex7.8
Adrenalgland5.85
Amygdala7.4
Appendix7.55
AtrioventricularNode5.65
BDCA4+_DentriticCells7.2
Bonemarrow7
BronchialEpithelialCells6.8
CD105+_Endothelial7.55
CD14+_Monocytes7.6
CD19+_BCells(neg._sel.)6.95
CD33+_Myeloid8.55
CD34+8.8
CD4+_Tcells7.75
CD56+_NKCells21.15
CD71+_EarlyErythroid6.55
CD8+_Tcells6.5
CardiacMyocytes36.55
Caudatenucleus6
Cerebellum8.05
CerebellumPeduncles11.5
CiliaryGanglion5.05
CingulateCortex7.1
Colorectaladenocarcinoma30
DorsalRootGanglion5.3
FetalThyroid6.95
Fetalbrain6.95
Fetalliver6.2
Fetallung11.65
GlobusPallidus5.45
Heart13.95
Hypothalamus7.4
Kidney5.85
Leukemia_chronicMyelogenousK-5628.1
Leukemia_promyelocytic-HL-606.05
Leukemialymphoblastic(MOLT-4)5.35
Liver14.75
Lung10.45
Lymphnode6.05
Lymphoma_burkitts(Daudi)8.5
Lymphoma_burkitts(Raji)10.25
MedullaOblongata6.3
OccipitalLobe6.2
OlfactoryBulb6.25
Ovary4.95
Pancreas5.8
PancreaticIslet7.8
ParietalLobe7.5
Pituitary8.45
Placenta7.4
Pons6.6
PrefrontalCortex8.95
Prostate9.4
Salivarygland6.7
SkeletalMuscle10.5
Skin5.9
SmoothMuscle24.2
Spinalcord8
SubthalamicNucleus6.4
SuperiorCervicalGanglion9.05
TemporalLobe6.3
Testis6
TestisGermCell7.3
TestisIntersitial6.5
TestisLeydigCell7.7
TestisSeminiferousTubule5.65
Thalamus7.1
Thymus5.45
Thyroid9.1
Tongue7.4
Tonsil7.3
Trachea5.9
TrigeminalGanglion7.95
Uterus10.7
UterusCorpus7.85
WholeBlood8.3
Wholebrain6.1
colon11.05
pineal_day9.76
pineal_night10.66
retina8.65
small_intestine6.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P1331
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.7 ± 1.21
Basal Forebrain3.28 ± 0.44
Basal Part of Pons3.13 ± 0.51
Cerebellar Cortex5.16 ± 0.85
Cerebellar Nuclei4.07 ± 0.54
Claustrum5.61 ± 0.83
Epithalamus3.48 ± 0.83
Frontal Lobe3.33 ± 0.87
Globus Pallidus3.04 ± 0.69
Hypothalamus3.89 ± 1.35
Insula4.12 ± 0.92
Limbic Lobe3.06 ± 0.84
Mesencephalon3.96 ± 1.14
Myelencephalon3.88 ± 0.89
Occipital Lobe5.4 ± 1.48
Parietal Lobe3.91 ± 0.99
Pontine Tegmentum3.87 ± 0.91
Striatum2.9 ± 0.64
Subthalamus3.32 ± 0.79
Temporal Lobe3.88 ± 0.87
Thalamus4.37 ± 0.75
White Matter2.33 ± 0.4
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Col13a1CBCerebellum23.79
32.65
Col13a1CTXCerebral cortex27.23
20.22
Col13a1HIPHippocampal region19.89
18.89
Col13a1HPFHippocampal formation17.42
15.57
Col13a1HYHypothalamus9.78
7.49
Col13a1LSXLateral septal complex13.32
9.74
Col13a1MBMidbrain13.19
11.52
Col13a1MYMedulla22.19
25.62
Col13a1OLFOlfactory bulb23.61
17.06
Col13a1PPons18.27
21.76
Col13a1PALPallidum10.74
9.39
Col13a1RHPRetrohippocampal region13.5
11.07
Col13a1sAMYStriatum-like amygdalar nuclei9.17
5.88
Col13a1STRStriatum8.61
6.15
Col13a1STRdStriatum dorsal region6.74
4.78
Col13a1STRvStriatum ventral region13.79
9.18
Col13a1THThalamus17.98
14.71
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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