Annotation Detail for COL15A1
Basic Information Top
| Gene Symbol: | COL15A1 ( FLJ38566 ) |
|---|---|
| Gene Full Name: | collagen, type XV, alpha 1 |
| Band: | 9q22.33 |
| Quick Links | Entrez ID:1306; OMIM: 120325; Uniprot ID:COFA1_HUMAN; ENSEMBL ID: ENSG00000204291; HGNC ID: 2192 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.409034
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 29 / 564012 | 51 |  |
| neonate | 1 / 31097 | 32 |  |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 91 / 1939121 | 46 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 4 / 12794 | 312 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 6 / 82823 | 72 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 5 / 119369 | 41 | |
| germ cell tumor | 2 / 263845 | 7 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 117 / 3360307 | 34 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 4 / 104616 | 38 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 3 / 13106 | 228 | |
| adrenal gland | 6 / 33197 | 180 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 7 / 1100989 | 6 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 9 / 149255 | 60 | |
| ear | 4 / 16212 | 246 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 4 / 211054 | 18 | |
| heart | 5 / 89626 | 55 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 3 / 336974 | 8 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 15 / 214812 | 69 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 27 / 280825 | 96 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 5 / 96619 | 51 | |
| testis | 12 / 330442 | 36 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 4 / 47473 | 84 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 11 / 232878 | 47 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 203477_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 7.4 | |
| Adipocyte | 312.35 | |
| AdrenalCortex | 175.6 | |
| Adrenalgland | 357.5 | |
| Amygdala | 6.5 | |
| Appendix | 41 | |
| AtrioventricularNode | 6.55 | |
| BDCA4+_DentriticCells | 6.05 | |
| Bonemarrow | 6.75 | |
| BronchialEpithelialCells | 5.8 | |
| CD105+_Endothelial | 6.2 | |
| CD14+_Monocytes | 6.55 | |
| CD19+_BCells(neg._sel.) | 6.5 | |
| CD33+_Myeloid | 8.15 | |
| CD34+ | 7 | |
| CD4+_Tcells | 6.6 | |
| CD56+_NKCells | 7.15 | |
| CD71+_EarlyErythroid | 5.6 | |
| CD8+_Tcells | 5.95 | |
| CardiacMyocytes | 8.15 | |
| Caudatenucleus | 6.1 | |
| Cerebellum | 5.6 | |
| CerebellumPeduncles | 7.65 | |
| CiliaryGanglion | 26.2 | |
| CingulateCortex | 6.45 | |
| Colorectaladenocarcinoma | 6.35 | |
| DorsalRootGanglion | 31.7 | |
| FetalThyroid | 35.1 | |
| Fetalbrain | 6.05 | |
| Fetalliver | 5.5 | |
| Fetallung | 5.5 | |
| GlobusPallidus | 4.95 | |
| Heart | 174.4 | |
| Hypothalamus | 6.9 | |
| Kidney | 5.7 | |
| Leukemia_chronicMyelogenousK-562 | 251 | |
| Leukemia_promyelocytic-HL-60 | 5.55 | |
| Leukemialymphoblastic(MOLT-4) | 5.15 | |
| Liver | 8.55 | |
| Lung | 17.4 | |
| Lymphnode | 57 | |
| Lymphoma_burkitts(Daudi) | 8.6 | |
| Lymphoma_burkitts(Raji) | 9.5 | |
| MedullaOblongata | 6 | |
| OccipitalLobe | 5.65 | |
| OlfactoryBulb | 155.15 | |
| Ovary | 77 | |
| Pancreas | 21.15 | |
| PancreaticIslet | 68.35 | |
| ParietalLobe | 7.3 | |
| Pituitary | 8.1 | |
| Placenta | 1494 |  |
| Pons | 6.6 | |
| PrefrontalCortex | 7.15 | |
| Prostate | 74.35 | |
| Salivarygland | 55.05 | |
| SkeletalMuscle | 9 | |
| Skin | 9.9 | |
| SmoothMuscle | 9.35 | |
| Spinalcord | 7.2 | |
| SubthalamicNucleus | 6.05 | |
| SuperiorCervicalGanglion | 8.65 | |
| TemporalLobe | 6.1 | |
| Testis | 202.7 | |
| TestisGermCell | 344.5 | |
| TestisIntersitial | 39.55 | |
| TestisLeydigCell | 37.4 | |
| TestisSeminiferousTubule | 61.25 | |
| Thalamus | 6.5 | |
| Thymus | 156.9 | |
| Thyroid | 114.65 | |
| Tongue | 9.1 | |
| Tonsil | 12.3 | |
| Trachea | 153.9 | |
| TrigeminalGanglion | 9.75 | |
| Uterus | 765.35 | |
| UterusCorpus | 20.2 | |
| WholeBlood | 6.55 | |
| Wholebrain | 5.1 | |
| colon | 208.25 | |
| pineal_day | 15.8 | |
| pineal_night | 108.08 | |
| retina | 124.675 | |
| small_intestine | 515.1 | |
- Probe name: A_24_P315120
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.26 ± 1.06 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.83 ± 0.21 | |
| Basal Part of Pons | 1.42 ± 0.35 | |
| Cerebellar Cortex | 1.62 ± 0.68 | |
| Cerebellar Nuclei | 2.1 ± 0.74 | |
| Claustrum | 2.57 ± 0.86 | |
| Epithalamus | 1.5 ± 0.71 | |
| Frontal Lobe | 1.64 ± 0.66 | |
| Globus Pallidus | 2.44 ± 0.44 | |
| Hypothalamus | 1.9 ± 0.69 | |
| Insula | 1.66 ± 0.52 | |
| Limbic Lobe | 1.71 ± 0.57 | |
| Mesencephalon | 1.94 ± 0.64 | |
| Myelencephalon | 1.84 ± 0.62 | |
| Occipital Lobe | 1.88 ± 0.62 | |
| Parietal Lobe | 1.81 ± 0.6 | |
| Pontine Tegmentum | 1.81 ± 0.66 | |
| Striatum | 2 ± 0.52 | |
| Subthalamus | 1.93 ± 0.64 | |
| Temporal Lobe | 1.68 ± 0.58 | |
| Thalamus | 1.76 ± 0.55 | |
| White Matter | 2.24 ± 0.23 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Col15a1 | CB | Cerebellum | 10.71 | |
| 12.36 | | |||
| Col15a1 | CTX | Cerebral cortex | 7.7 | |
| 7.03 | | |||
| Col15a1 | HIP | Hippocampal region | 7.49 | |
| 10.71 | | |||
| Col15a1 | HPF | Hippocampal formation | 5.43 | |
| 6.65 | | |||
| Col15a1 | HY | Hypothalamus | 10.92 | |
| 9.3 | | |||
| Col15a1 | LSX | Lateral septal complex | 43.28 | |
| 40.68 | | |||
| Col15a1 | MB | Midbrain | 12.58 | |
| 12.11 | | |||
| Col15a1 | MY | Medulla | 8.21 | |
| 9.39 | | |||
| Col15a1 | OLF | Olfactory bulb | 6.11 | |
| 5.37 | | |||
| Col15a1 | P | Pons | 7.46 | |
| 6.88 | | |||
| Col15a1 | PAL | Pallidum | 4.06 | |
| 4.6 | | |||
| Col15a1 | RHP | Retrohippocampal region | 2.91 | |
| 2.41 | | |||
| Col15a1 | sAMY | Striatum-like amygdalar nuclei | 4.19 | |
| 3.58 | | |||
| Col15a1 | STR | Striatum | 4.94 | |
| 4.56 | | |||
| Col15a1 | STRd | Striatum dorsal region | 2.02 | |
| 1.99 | | |||
| Col15a1 | STRv | Striatum ventral region | 1.69 | |
| 1.38 | | |||
| Col15a1 | TH | Thalamus | 13.87 | |
| 12.75 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00094395 | 17 | 1344 | 1360 | TADTAVTGLASPLSTGK | Peptide Atlas |