Annotation Detail for CPNE4
Basic Information Top
| Gene Symbol: | CPNE4 ( COPN4,CPN4,MGC15604 ) |
|---|---|
| Gene Full Name: | copine IV |
| Band: | 3q22.1 |
| Quick Links | Entrez ID:131034; OMIM: 604208; Uniprot ID:CPNE4_HUMAN; ENSEMBL ID: ENSG00000196353; HGNC ID: 2317 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.199877
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 26 / 564012 | 46 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 33 / 1939121 | 17 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 5 / 106883 | 46 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 7 / 68959 | 101 |  |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 145 / 3360307 | 43 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 10 / 102680 | 97 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 11 / 125191 | 87 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 89 / 1100989 | 80 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 11 / 149255 | 73 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 5 / 89626 | 55 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 8 / 211777 | 37 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 3 / 336974 | 8 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 21 / 189345 | 110 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 0 / 96619 | 0 | |
| testis | 3 / 330442 | 9 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_13_PI416408490
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.85 ± 0.93 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.84 ± 0.34 | |
| Basal Part of Pons | 4.63 ± 0.35 | |
| Cerebellar Cortex | 4.54 ± 0.63 | |
| Cerebellar Nuclei | 3.89 ± 0.86 | |
| Claustrum | 7.33 ± 0.62 | |
| Epithalamus | 4.39 ± 0.8 | |
| Frontal Lobe | 5.63 ± 0.84 | |
| Globus Pallidus | 3.96 ± 1.35 | |
| Hypothalamus | 4.66 ± 0.7 | |
| Insula | 6.2 ± 0.74 | |
| Limbic Lobe | 6.05 ± 0.93 | |
| Mesencephalon | 5 ± 0.99 | |
| Myelencephalon | 5.42 ± 0.83 | |
| Occipital Lobe | 5.92 ± 0.63 | |
| Parietal Lobe | 5.46 ± 0.71 | |
| Pontine Tegmentum | 5.45 ± 0.81 | |
| Striatum | 4.61 ± 1.51 | |
| Subthalamus | 5.3 ± 0.83 | |
| Temporal Lobe | 5.86 ± 0.61 | |
| Thalamus | 5.95 ± 0.68 | |
| White Matter | 3.32 ± 0.56 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Cpne4 | CB | Cerebellum | 1.75 | |
| 2.25 | | |||
| Cpne4 | CTX | Cerebral cortex | 25.8 | |
| 26.41 | | |||
| Cpne4 | HIP | Hippocampal region | 42.86 | |
| 73.28 | | |||
| Cpne4 | HPF | Hippocampal formation | 30.74 | |
| 46.48 | | |||
| Cpne4 | HY | Hypothalamus | 2.46 | |
| 2.59 | | |||
| Cpne4 | LSX | Lateral septal complex | 32.68 | |
| 38.48 | | |||
| Cpne4 | MB | Midbrain | 7.1 | |
| 7.47 | | |||
| Cpne4 | MY | Medulla | 10.5 | |
| 14.27 | | |||
| Cpne4 | OLF | Olfactory bulb | 53.96 | |
| 66.23 | | |||
| Cpne4 | P | Pons | 3.55 | |
| 4.59 | | |||
| Cpne4 | PAL | Pallidum | 7.32 | |
| 8.33 | | |||
| Cpne4 | RHP | Retrohippocampal region | 12.73 | |
| 13.51 | | |||
| Cpne4 | sAMY | Striatum-like amygdalar nuclei | 17.81 | |
| 18.23 | | |||
| Cpne4 | STR | Striatum | 10.35 | |
| 13.5 | | |||
| Cpne4 | STRd | Striatum dorsal region | 6.54 | |
| 10.53 | | |||
| Cpne4 | STRv | Striatum ventral region | 10.22 | |
| 11.94 | | |||
| Cpne4 | TH | Thalamus | 18.67 | |
| 22.94 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| CPNE4_HUMAN_500 | 9 | 500 | 508 | DIVQFVPFR | PRIDE |
| PAp00412132 | 9 | 501 | 509 | DIVQFVPFR | Peptide Atlas |