AutismKB 2.0

Annotation Detail for COMP


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Basic Information Top
Gene Symbol:COMP ( EDM1,EPD1,MED,MGC131819,MGC149768,PSACH,THBS5 )
Gene Full Name: cartilage oligomeric matrix protein
Band: 19p13.11
Quick LinksEntrez ID:1311; OMIM: 600310; Uniprot ID:COMP_HUMAN; ENSEMBL ID: ENSG00000105664; HGNC ID: 2227
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus5 / 5640128
neonate0 / 310970 
infant0 / 236200 
juvenile3 / 5555653
adult132 / 193912168
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor7 / 9417874
cervical tumor0 / 343660 
chondrosarcoma26 / 82823313
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor2 / 2638457
glioma0 / 1068830 
head and neck tumor24 / 136302176
kidney tumor0 / 689590 
leukemia1 / 9584210
liver tumor3 / 9635931
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia331 / 972503403
normal308 / 336030791
ovarian tumor0 / 766820 
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue3 / 13106228
adrenal gland0 / 331970 
ascites0 / 400150 
bladder7 / 29757235
blood0 / 1234780 
bone60 / 71655837
bone marrow0 / 488010 
brain11 / 11009899
cervix0 / 481710 
connective tissue528 / 1492553537
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus0 / 202090 
eye0 / 2110540 
heart4 / 8962644
intestine3 / 23447212
kidney0 / 2117770 
larynx1 / 2414541
liver3 / 20774314
lung1 / 3369742
lymph0 / 442700 
lymph node0 / 916100 
mammary gland7 / 15327145
mouth26 / 67052387
muscle0 / 1077150 
nerve0 / 157680 
ovary2 / 10205119
pancreas4 / 21481218
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta10 / 28082535
prostate7 / 18934536
salivary gland0 / 201550 
skin3 / 21057414
spleen0 / 539520 
stomach1 / 9661910
testis5 / 33044215
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea20 / 52413381
umbilical cord0 / 136800 
uterus18 / 23287877
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205713_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts7
Adipocyte581.75
AdrenalCortex7.85
Adrenalgland5.05
Amygdala6.05
Appendix6.15
AtrioventricularNode20
BDCA4+_DentriticCells6.1
Bonemarrow6.25
BronchialEpithelialCells5.8
CD105+_Endothelial6
CD14+_Monocytes6.35
CD19+_BCells(neg._sel.)5.95
CD33+_Myeloid7.3
CD34+7.2
CD4+_Tcells6.35
CD56+_NKCells6.6
CD71+_EarlyErythroid5.65
CD8+_Tcells5.5
CardiacMyocytes7.75
Caudatenucleus5.25
Cerebellum4.9
CerebellumPeduncles6.85
CiliaryGanglion23
CingulateCortex6.15
Colorectaladenocarcinoma5.95
DorsalRootGanglion4.95
FetalThyroid5.8
Fetalbrain5.6
Fetalliver5.15
Fetallung4.8
GlobusPallidus5.3
Heart9.25
Hypothalamus6.45
Kidney5.1
Leukemia_chronicMyelogenousK-5625.15
Leukemia_promyelocytic-HL-605.15
Leukemialymphoblastic(MOLT-4)4.55
Liver8.1
Lung21.2
Lymphnode4.75
Lymphoma_burkitts(Daudi)7.6
Lymphoma_burkitts(Raji)8.65
MedullaOblongata5.4
OccipitalLobe5.15
OlfactoryBulb4.75
Ovary4
Pancreas7.9
PancreaticIslet6.3
ParietalLobe6.45
Pituitary6.95
Placenta11.3
Pons5.75
PrefrontalCortex7.2
Prostate6.95
Salivarygland4.85
SkeletalMuscle29.05
Skin4.85
SmoothMuscle6.5
Spinalcord6.35
SubthalamicNucleus5.55
SuperiorCervicalGanglion7.1
TemporalLobe5.45
Testis5.45
TestisGermCell10.1
TestisIntersitial7.9
TestisLeydigCell12.45
TestisSeminiferousTubule6.8
Thalamus6.15
Thymus4.3
Thyroid7.45
Tongue44.3
Tonsil5.8
Trachea7.65
TrigeminalGanglion6.6
Uterus8.6
UterusCorpus5.55
WholeBlood6.2
Wholebrain4.75
colon5.8
pineal_day7.62
pineal_night8.7
retina7.175
small_intestine5.65
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P90436
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.16 ± 1.09
Basal Forebrain2.04 ± 0.28
Basal Part of Pons1.83 ± 0.71
Cerebellar Cortex1.47 ± 0.59
Cerebellar Nuclei2.06 ± 0.59
Claustrum2.38 ± 0.71
Epithalamus1.57 ± 0.66
Frontal Lobe1.97 ± 0.75
Globus Pallidus3.33 ± 0.46
Hypothalamus2.25 ± 0.56
Insula1.66 ± 0.8
Limbic Lobe1.92 ± 0.86
Mesencephalon2.23 ± 0.91
Myelencephalon2.07 ± 0.76
Occipital Lobe1.93 ± 0.81
Parietal Lobe2.14 ± 0.74
Pontine Tegmentum2.07 ± 0.75
Striatum2.31 ± 0.7
Subthalamus1.93 ± 0.55
Temporal Lobe1.86 ± 0.84
Thalamus2.2 ± 0.59
White Matter1.57 ± 0.22
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00044190 20 699 718 FYEGPELVADSNVVLDTTMR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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