Annotation Detail for TPRA1
Basic Information Top
| Gene Symbol: | TPRA1 ( FLJ32197,GPR175,TMEM227,TPRA40 ) |
|---|---|
| Gene Full Name: | transmembrane protein, adipocyte asscociated 1 |
| Band: | 3q21.3 |
| Quick Links | Entrez ID:131601; OMIM: 608336; Uniprot ID:TPRA1_HUMAN; ENSEMBL ID: ENSG00000163870; HGNC ID: 30413 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.6418
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 3 / 62319 | 48 | |
| fetus | 14 / 564012 | 24 | |
| neonate | 0 / 31097 | 0 | |
| infant | 2 / 23620 | 84 |  |
| juvenile | 1 / 55556 | 17 | |
| adult | 98 / 1939121 | 50 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 7 / 34366 | 203 |  |
| chondrosarcoma | 12 / 82823 | 144 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 8 / 119369 | 67 | |
| germ cell tumor | 9 / 263845 | 34 | |
| glioma | 5 / 106883 | 46 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 5 / 68959 | 72 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 8 / 71755 | 111 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 95 / 3360307 | 28 | |
| ovarian tumor | 5 / 76682 | 65 | |
| pancreatic tumor | 6 / 104616 | 57 | |
| primitive neuroectodermal tumor of the CNS | 15 / 125680 | 119 | |
| prostate cancer | 5 / 102680 | 48 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 5 / 123478 | 40 | |
| bone | 6 / 71655 | 83 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 34 / 1100989 | 30 | |
| cervix | 7 / 48171 | 145 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 6 / 215722 | 27 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 0 / 89626 | 0 | |
| intestine | 7 / 234472 | 29 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 1 / 24145 | 41 | |
| liver | 1 / 207743 | 4 | |
| lung | 8 / 336974 | 23 | |
| lymph | 4 / 44270 | 90 | |
| lymph node | 5 / 91610 | 54 | |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 3 / 15768 | 190 | |
| ovary | 9 / 102051 | 88 | |
| pancreas | 10 / 214812 | 46 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 21 / 280825 | 74 | |
| prostate | 6 / 189345 | 31 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 6 / 96619 | 62 | |
| testis | 3 / 330442 | 9 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 9 / 232878 | 38 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 218855_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 18.8 | |
| Adipocyte | 4.85 | |
| AdrenalCortex | 5.5 | |
| Adrenalgland | 4.15 | |
| Amygdala | 5 | |
| Appendix | 4.9 | |
| AtrioventricularNode | 3.7 | |
| BDCA4+_DentriticCells | 8.1 | |
| Bonemarrow | 7.2 | |
| BronchialEpithelialCells | 12.05 | |
| CD105+_Endothelial | 33.65 | |
| CD14+_Monocytes | 8.8 | |
| CD19+_BCells(neg._sel.) | 6.75 | |
| CD33+_Myeloid | 16.2 | |
| CD34+ | 15.05 | |
| CD4+_Tcells | 12.1 | |
| CD56+_NKCells | 10.2 | |
| CD71+_EarlyErythroid | 69.5 | |
| CD8+_Tcells | 11.1 | |
| CardiacMyocytes | 10 | |
| Caudatenucleus | 4.1 | |
| Cerebellum | 4 | |
| CerebellumPeduncles | 5.6 | |
| CiliaryGanglion | 3.15 | |
| CingulateCortex | 4.4 | |
| Colorectaladenocarcinoma | 33.75 | |
| DorsalRootGanglion | 3.6 | |
| FetalThyroid | 4.7 | |
| Fetalbrain | 4.8 | |
| Fetalliver | 4.3 | |
| Fetallung | 6.2 | |
| GlobusPallidus | 3.6 | |
| Heart | 14.7 | |
| Hypothalamus | 5.05 | |
| Kidney | 4 | |
| Leukemia_chronicMyelogenousK-562 | 5.5 | |
| Leukemia_promyelocytic-HL-60 | 5.15 | |
| Leukemialymphoblastic(MOLT-4) | 5.25 | |
| Liver | 14.2 | |
| Lung | 73.55 | |
| Lymphnode | 4.9 | |
| Lymphoma_burkitts(Daudi) | 6.4 | |
| Lymphoma_burkitts(Raji) | 26.55 | |
| MedullaOblongata | 4.4 | |
| OccipitalLobe | 4 | |
| OlfactoryBulb | 4.25 | |
| Ovary | 3.25 | |
| Pancreas | 4.05 | |
| PancreaticIslet | 4.6 | |
| ParietalLobe | 4.7 | |
| Pituitary | 5.5 | |
| Placenta | 13.2 | |
| Pons | 4.15 | |
| PrefrontalCortex | 6.25 | |
| Prostate | 23.05 | |
| Salivarygland | 3.8 | |
| SkeletalMuscle | 5.15 | |
| Skin | 3.55 | |
| SmoothMuscle | 10.15 | |
| Spinalcord | 6.9 | |
| SubthalamicNucleus | 3.8 | |
| SuperiorCervicalGanglion | 5 | |
| TemporalLobe | 4.3 | |
| Testis | 6.3 | |
| TestisGermCell | 3.95 | |
| TestisIntersitial | 4.05 | |
| TestisLeydigCell | 4.8 | |
| TestisSeminiferousTubule | 4.15 | |
| Thalamus | 4.7 | |
| Thymus | 4.2 | |
| Thyroid | 22.6 | |
| Tongue | 4.65 | |
| Tonsil | 4.8 | |
| Trachea | 4.1 | |
| TrigeminalGanglion | 4.4 | |
| Uterus | 8.8 | |
| UterusCorpus | 4.45 | |
| WholeBlood | 5.35 | |
| Wholebrain | 4.2 | |
| colon | 4.95 | |
| pineal_day | 8.76 | |
| pineal_night | 11.18 | |
| retina | 9.35 | |
| small_intestine | 4.75 | |
- Probe name: CUST_8759_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.24 ± 0.55 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.22 ± 0.33 | |
| Basal Part of Pons | 4.32 ± 0.32 | |
| Cerebellar Cortex | 4.36 ± 0.5 | |
| Cerebellar Nuclei | 4.28 ± 0.47 | |
| Claustrum | 4.26 ± 0.73 | |
| Epithalamus | 4.03 ± 0.34 | |
| Frontal Lobe | 4.38 ± 0.47 | |
| Globus Pallidus | 4.48 ± 0.41 | |
| Hypothalamus | 4.47 ± 0.39 | |
| Insula | 4.19 ± 0.56 | |
| Limbic Lobe | 4.28 ± 0.44 | |
| Mesencephalon | 4.33 ± 0.43 | |
| Myelencephalon | 4.35 ± 0.47 | |
| Occipital Lobe | 4.13 ± 0.38 | |
| Parietal Lobe | 4.21 ± 0.46 | |
| Pontine Tegmentum | 4.12 ± 0.58 | |
| Striatum | 4.18 ± 0.53 | |
| Subthalamus | 4.23 ± 0.68 | |
| Temporal Lobe | 4.32 ± 0.42 | |
| Thalamus | 4.26 ± 0.54 | |
| White Matter | 4.65 ± 0.45 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Gpr175 | CB | Cerebellum | 27.85 | |
| 33.23 | | |||
| Gpr175 | CTX | Cerebral cortex | 15.22 | |
| 10.93 | | |||
| Gpr175 | HIP | Hippocampal region | 11.11 | |
| 10.06 | | |||
| Gpr175 | HPF | Hippocampal formation | 13.92 | |
| 11.53 | | |||
| Gpr175 | HY | Hypothalamus | 22.94 | |
| 16.9 | | |||
| Gpr175 | LSX | Lateral septal complex | 5.27 | |
| 3.89 | | |||
| Gpr175 | MB | Midbrain | 31.46 | |
| 26.71 | | |||
| Gpr175 | MY | Medulla | 40.78 | |
| 41.99 | | |||
| Gpr175 | OLF | Olfactory bulb | 17.48 | |
| 13.24 | | |||
| Gpr175 | P | Pons | 34.57 | |
| 33.66 | | |||
| Gpr175 | PAL | Pallidum | 16.91 | |
| 14.24 | | |||
| Gpr175 | RHP | Retrohippocampal region | 18.59 | |
| 13.51 | | |||
| Gpr175 | sAMY | Striatum-like amygdalar nuclei | 15.95 | |
| 11.21 | | |||
| Gpr175 | STR | Striatum | 6.73 | |
| 4.92 | | |||
| Gpr175 | STRd | Striatum dorsal region | 4.92 | |
| 3.82 | | |||
| Gpr175 | STRv | Striatum ventral region | 9.51 | |
| 6.18 | | |||
| Gpr175 | TH | Thalamus | 27.49 | |
| 21.21 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00039751 | 21 | 296 | 316 | CQVDETEEPDVHLPQPYAVAR | Peptide Atlas |