Annotation Detail for TMEM42
Basic Information Top
| Gene Symbol: | TMEM42 ( MGC29956 ) |
|---|---|
| Gene Full Name: | transmembrane protein 42 |
| Band: | 3p21.31 |
| Quick Links | Entrez ID:131616; OMIM: NA; Uniprot ID:TMM42_HUMAN; ENSEMBL ID: ENSG00000169964; HGNC ID: 28444 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.646856
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 18 / 564012 | 31 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 43 / 1939121 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 1 / 263845 | 3 |  |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 65 / 3360307 | 19 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 5 / 125680 | 39 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 14 / 1100989 | 12 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 2 / 16212 | 123 |  |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 4 / 211054 | 18 | |
| heart | 0 / 89626 | 0 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 0 / 24145 | 0 | |
| liver | 3 / 207743 | 14 | |
| lung | 11 / 336974 | 32 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 9 / 214812 | 41 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 6 / 330442 | 18 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 6 / 232878 | 25 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_1295_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.89 ± 0.62 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.1 ± 0.66 | |
| Basal Part of Pons | 5.2 ± 0.3 | |
| Cerebellar Cortex | 4.85 ± 0.47 | |
| Cerebellar Nuclei | 5.01 ± 0.41 | |
| Claustrum | 4.4 ± 0.85 | |
| Epithalamus | 5.48 ± 0.54 | |
| Frontal Lobe | 5.12 ± 0.48 | |
| Globus Pallidus | 5.35 ± 0.73 | |
| Hypothalamus | 5.28 ± 0.67 | |
| Insula | 5.13 ± 0.47 | |
| Limbic Lobe | 4.7 ± 0.58 | |
| Mesencephalon | 4.87 ± 0.5 | |
| Myelencephalon | 4.93 ± 0.6 | |
| Occipital Lobe | 4.31 ± 0.48 | |
| Parietal Lobe | 4.81 ± 0.52 | |
| Pontine Tegmentum | 4.93 ± 0.61 | |
| Striatum | 4.82 ± 0.5 | |
| Subthalamus | 5.1 ± 0.63 | |
| Temporal Lobe | 5.14 ± 0.5 | |
| Thalamus | 4.86 ± 0.52 | |
| White Matter | 5.98 ± 0.44 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Tmem42 | CB | Cerebellum | 18.81 | |
| 23.15 | | |||
| Tmem42 | CTX | Cerebral cortex | 30.22 | |
| 21.95 | | |||
| Tmem42 | HIP | Hippocampal region | 10 | |
| 10.21 | | |||
| Tmem42 | HPF | Hippocampal formation | 10.3 | |
| 9.42 | | |||
| Tmem42 | HY | Hypothalamus | 1.09 | |
| 1.25 | | |||
| Tmem42 | LSX | Lateral septal complex | 0.46 | |
| 0.41 | | |||
| Tmem42 | MB | Midbrain | 3.36 | |
| 3.23 | | |||
| Tmem42 | MY | Medulla | 8.37 | |
| 8.89 | | |||
| Tmem42 | OLF | Olfactory bulb | 22.21 | |
| 16.64 | | |||
| Tmem42 | P | Pons | 2.54 | |
| 2.77 | | |||
| Tmem42 | PAL | Pallidum | 4.55 | |
| 3.85 | | |||
| Tmem42 | RHP | Retrohippocampal region | 10.86 | |
| 8.39 | | |||
| Tmem42 | sAMY | Striatum-like amygdalar nuclei | 2.26 | |
| 1.62 | | |||
| Tmem42 | STR | Striatum | 3.49 | |
| 2.43 | | |||
| Tmem42 | STRd | Striatum dorsal region | 3.27 | |
| 2.32 | | |||
| Tmem42 | STRv | Striatum ventral region | 5.88 | |
| 3.71 | | |||
| Tmem42 | TH | Thalamus | 2.3 | |
| 1.91 | |