Annotation Detail for LIN54
Basic Information Top
| Gene Symbol: | LIN54 ( CXCDC1,DKFZp686L1814,JC8.6,MGC129905,MIP120 ) |
|---|---|
| Gene Full Name: | lin-54 homolog (C. elegans) |
| Band: | 4q21.22 |
| Quick Links | Entrez ID:132660; OMIM: 613367; Uniprot ID:LIN54_HUMAN; ENSEMBL ID: ENSG00000189308; HGNC ID: 25397 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.96952
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 3 / 564012 | 5 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 2 / 23620 | 84 |  |
| juvenile | 0 / 55556 | 0 | |
| adult | 25 / 1939121 | 12 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 45 / 3360307 | 13 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 13 / 1100989 | 11 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 2 / 336974 | 5 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 3 / 210574 | 14 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 8 / 330442 | 24 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 3 / 52413 | 57 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_23_P58382
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.67 ± 0.38 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.86 ± 0.09 | |
| Basal Part of Pons | 5.66 ± 0.29 | |
| Cerebellar Cortex | 5.81 ± 0.29 | |
| Cerebellar Nuclei | 5.6 ± 0.36 | |
| Claustrum | 5.72 ± 0.69 | |
| Epithalamus | 5.68 ± 0.38 | |
| Frontal Lobe | 5.72 ± 0.32 | |
| Globus Pallidus | 5.91 ± 0.22 | |
| Hypothalamus | 5.45 ± 0.35 | |
| Insula | 5.74 ± 0.21 | |
| Limbic Lobe | 5.87 ± 0.34 | |
| Mesencephalon | 5.79 ± 0.38 | |
| Myelencephalon | 5.73 ± 0.41 | |
| Occipital Lobe | 5.83 ± 0.34 | |
| Parietal Lobe | 5.86 ± 0.39 | |
| Pontine Tegmentum | 5.85 ± 0.36 | |
| Striatum | 5.73 ± 0.26 | |
| Subthalamus | 5.68 ± 0.4 | |
| Temporal Lobe | 5.82 ± 0.32 | |
| Thalamus | 5.67 ± 0.33 | |
| White Matter | 6.97 ± 0.32 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| AI461788 | CB | Cerebellum | 2.44 | |
| 3.84 | | |||
| AI461788 | CTX | Cerebral cortex | 1.53 | |
| 1.44 | | |||
| AI461788 | HIP | Hippocampal region | 3.07 | |
| 2.76 | | |||
| AI461788 | HPF | Hippocampal formation | 1.94 | |
| 1.62 | | |||
| AI461788 | HY | Hypothalamus | 0.21 | |
| 0.36 | | |||
| AI461788 | LSX | Lateral septal complex | 0.22 | |
| 0.12 | | |||
| AI461788 | MB | Midbrain | 0.54 | |
| 0.57 | | |||
| AI461788 | MY | Medulla | 1.27 | |
| 1.59 | | |||
| AI461788 | OLF | Olfactory bulb | 1.75 | |
| 2.58 | | |||
| AI461788 | P | Pons | 0.45 | |
| 0.68 | | |||
| AI461788 | PAL | Pallidum | 0.16 | |
| 0.17 | | |||
| AI461788 | RHP | Retrohippocampal region | 0.78 | |
| 0.57 | | |||
| AI461788 | sAMY | Striatum-like amygdalar nuclei | 0.36 | |
| 0.75 | | |||
| AI461788 | STR | Striatum | 0.26 | |
| 0.24 | | |||
| AI461788 | STRd | Striatum dorsal region | 0.16 | |
| 0.12 | | |||
| AI461788 | STRv | Striatum ventral region | 0.59 | |
| 0.51 | | |||
| AI461788 | TH | Thalamus | 0.59 | |
| 0.44 | |