Annotation Detail for GNPDA2
Basic Information Top
| Gene Symbol: | GNPDA2 ( GNP2,SB52 ) |
|---|---|
| Gene Full Name: | glucosamine-6-phosphate deaminase 2 |
| Band: | 4p12 |
| Quick Links | Entrez ID:132789; OMIM: 613222; Uniprot ID:GNPI2_HUMAN; ENSEMBL ID: ENSG00000163281; HGNC ID: 21526 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.21398
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 16 / 564012 | 28 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 3 / 55556 | 53 |  |
| adult | 56 / 1939121 | 28 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 3 / 263845 | 11 | |
| glioma | 11 / 106883 | 102 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 4 / 96359 | 41 | |
| lung tumor | 1 / 103127 | 9 |  |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 109 / 3360307 | 32 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 5 / 124949 | 40 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 3 / 29757 | 100 | |
| blood | 2 / 123478 | 16 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 64 / 1100989 | 58 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 8 / 211054 | 37 | |
| heart | 3 / 89626 | 33 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 9 / 211777 | 42 | |
| larynx | 0 / 24145 | 0 | |
| liver | 6 / 207743 | 28 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 7 / 107715 | 64 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 9 / 214812 | 41 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 7 / 210574 | 33 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 3 / 96619 | 31 | |
| testis | 5 / 330442 | 15 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 6 / 232878 | 25 | |
| vascular | 4 / 51780 | 77 | |
Microarray in - Probe name: CUST_11093_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.8 ± 0.33 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.67 ± 0.19 | |
| Basal Part of Pons | 5.86 ± 0.32 | |
| Cerebellar Cortex | 6.17 ± 0.21 | |
| Cerebellar Nuclei | 5.89 ± 0.39 | |
| Claustrum | 5.64 ± 0.39 | |
| Epithalamus | 5.57 ± 0.44 | |
| Frontal Lobe | 5.82 ± 0.38 | |
| Globus Pallidus | 5.1 ± 0.35 | |
| Hypothalamus | 5.78 ± 0.16 | |
| Insula | 5.82 ± 0.23 | |
| Limbic Lobe | 5.85 ± 0.46 | |
| Mesencephalon | 5.61 ± 0.51 | |
| Myelencephalon | 5.67 ± 0.48 | |
| Occipital Lobe | 5.75 ± 0.43 | |
| Parietal Lobe | 5.81 ± 0.37 | |
| Pontine Tegmentum | 5.83 ± 0.37 | |
| Striatum | 5.26 ± 0.36 | |
| Subthalamus | 5.52 ± 0.83 | |
| Temporal Lobe | 5.81 ± 0.36 | |
| Thalamus | 5.69 ± 0.34 | |
| White Matter | 5.09 ± 0.09 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Gnpda2 | CB | Cerebellum | 3.71 | |
| 5.39 | | |||
| Gnpda2 | CTX | Cerebral cortex | 13.13 | |
| 10.29 | | |||
| Gnpda2 | HIP | Hippocampal region | 4.03 | |
| 3.63 | | |||
| Gnpda2 | HPF | Hippocampal formation | 3.12 | |
| 2.84 | | |||
| Gnpda2 | HY | Hypothalamus | 1.86 | |
| 1.87 | | |||
| Gnpda2 | LSX | Lateral septal complex | 2.6 | |
| 1.7 | | |||
| Gnpda2 | MB | Midbrain | 2.34 | |
| 3.13 | | |||
| Gnpda2 | MY | Medulla | 1.47 | |
| 2.02 | | |||
| Gnpda2 | OLF | Olfactory bulb | 4.79 | |
| 4.47 | | |||
| Gnpda2 | P | Pons | 1.33 | |
| 2.04 | | |||
| Gnpda2 | PAL | Pallidum | 0.82 | |
| 0.72 | | |||
| Gnpda2 | RHP | Retrohippocampal region | 1.63 | |
| 1.67 | | |||
| Gnpda2 | sAMY | Striatum-like amygdalar nuclei | 2.36 | |
| 2.11 | | |||
| Gnpda2 | STR | Striatum | 0.94 | |
| 0.74 | | |||
| Gnpda2 | STRd | Striatum dorsal region | 0.26 | |
| 0.22 | | |||
| Gnpda2 | STRv | Striatum ventral region | 1.64 | |
| 1.13 | | |||
| Gnpda2 | TH | Thalamus | 1.08 | |
| 0.91 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00008888 | 17 | 34 | 50 | YFTLGLPTGSTPLGCYK | Peptide Atlas |