Annotation Detail for PACRGL
Basic Information Top
| Gene Symbol: | PACRGL ( C4orf28,MGC29898 ) |
|---|---|
| Gene Full Name: | PARK2 co-regulated-like |
| Band: | 4p15.31 |
| Quick Links | Entrez ID:133015; OMIM: NA; Uniprot ID:PACRL_HUMAN; ENSEMBL ID: ENSG00000163138; HGNC ID: 28442 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.479298
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 19 / 564012 | 33 | |
| neonate | 3 / 31097 | 96 |  |
| infant | 1 / 23620 | 42 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 40 / 1939121 | 20 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 6 / 95842 | 62 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 101 / 3360307 | 30 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 8 / 125680 | 63 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 3 / 29757 | 100 | |
| blood | 5 / 123478 | 40 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 30 / 1100989 | 27 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 7 / 215722 | 32 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 6 / 211054 | 28 | |
| heart | 1 / 89626 | 11 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 3 / 336974 | 8 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 10 / 214812 | 46 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 7 / 280825 | 24 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 8 / 210574 | 37 | |
| spleen | 4 / 53952 | 74 | |
| stomach | 2 / 96619 | 20 | |
| testis | 25 / 330442 | 75 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 8 / 232878 | 34 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: CUST_7489_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.48 ± 0.53 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.55 ± 0.21 | |
| Basal Part of Pons | 6.57 ± 0.44 | |
| Cerebellar Cortex | 6.07 ± 0.24 | |
| Cerebellar Nuclei | 5.99 ± 0.47 | |
| Claustrum | 6.18 ± 0.51 | |
| Epithalamus | 6.63 ± 0.63 | |
| Frontal Lobe | 6.56 ± 0.36 | |
| Globus Pallidus | 6.23 ± 0.5 | |
| Hypothalamus | 6.36 ± 0.38 | |
| Insula | 6.76 ± 0.26 | |
| Limbic Lobe | 6.78 ± 0.43 | |
| Mesencephalon | 6.43 ± 0.29 | |
| Myelencephalon | 6.42 ± 0.45 | |
| Occipital Lobe | 6.31 ± 0.43 | |
| Parietal Lobe | 6.49 ± 0.36 | |
| Pontine Tegmentum | 6.49 ± 0.47 | |
| Striatum | 6.77 ± 0.33 | |
| Subthalamus | 6.1 ± 0.61 | |
| Temporal Lobe | 6.6 ± 0.38 | |
| Thalamus | 6.26 ± 0.36 | |
| White Matter | 6.65 ± 0.3 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 4933428G09Rik | CB | Cerebellum | 4.16 | |
| 7.2 | | |||
| 4933428G09Rik | CTX | Cerebral cortex | 1.81 | |
| 1.68 | | |||
| 4933428G09Rik | HIP | Hippocampal region | 4.06 | |
| 3.72 | | |||
| 4933428G09Rik | HPF | Hippocampal formation | 3.92 | |
| 3.7 | | |||
| 4933428G09Rik | HY | Hypothalamus | 5.4 | |
| 4.63 | | |||
| 4933428G09Rik | LSX | Lateral septal complex | 3.34 | |
| 3.65 | | |||
| 4933428G09Rik | MB | Midbrain | 1.03 | |
| 2.11 | | |||
| 4933428G09Rik | MY | Medulla | 1.87 | |
| 2.9 | | |||
| 4933428G09Rik | OLF | Olfactory bulb | 15.22 | |
| 14.52 | | |||
| 4933428G09Rik | P | Pons | 5.06 | |
| 7.51 | | |||
| 4933428G09Rik | PAL | Pallidum | 3.42 | |
| 2.86 | | |||
| 4933428G09Rik | RHP | Retrohippocampal region | 3.55 | |
| 3.89 | | |||
| 4933428G09Rik | sAMY | Striatum-like amygdalar nuclei | 4.28 | |
| 3.48 | | |||
| 4933428G09Rik | STR | Striatum | 3.21 | |
| 2.65 | | |||
| 4933428G09Rik | STRd | Striatum dorsal region | 1.99 | |
| 1.69 | | |||
| 4933428G09Rik | STRv | Striatum ventral region | 7.77 | |
| 5.58 | | |||
| 4933428G09Rik | TH | Thalamus | 1.52 | |
| 1.51 | |