Annotation Detail for NHEDC2
Basic Information Top
| Gene Symbol: | NHEDC2 ( FLJ23984,NHA2,NHE10 ) |
|---|---|
| Gene Full Name: | Na+/H+ exchanger domain containing 2 |
| Band: | 4q24 |
| Quick Links | Entrez ID:133308; OMIM: 611789; Uniprot ID:NHDC2_HUMAN; ENSEMBL ID: ENSG00000164038; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.546482
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 31 / 564012 | 54 |  |
| neonate | 7 / 31097 | 225 |  |
| infant | 1 / 23620 | 42 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 39 / 1939121 | 20 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 7 / 263845 | 26 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 5 / 68959 | 72 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 135 / 3360307 | 40 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 |  |
| primitive neuroectodermal tumor of the CNS | 5 / 125680 | 39 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 9 / 125191 | 71 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 10 / 123478 | 80 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 75 / 1100989 | 68 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 10 / 149255 | 66 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 7 / 211054 | 33 | |
| heart | 2 / 89626 | 22 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 4 / 207743 | 19 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 1 / 96619 | 10 | |
| testis | 8 / 330442 | 24 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 4 / 51780 | 77 | |
Microarray in - Probe name: A_23_P81094
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.95 ± 0.4 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.93 ± 0.37 | |
| Basal Part of Pons | 5.55 ± 0.17 | |
| Cerebellar Cortex | 5.35 ± 0.31 | |
| Cerebellar Nuclei | 4.92 ± 0.38 | |
| Claustrum | 5.18 ± 0.75 | |
| Epithalamus | 5.3 ± 0.36 | |
| Frontal Lobe | 5.1 ± 0.4 | |
| Globus Pallidus | 4.01 ± 0.52 | |
| Hypothalamus | 5.17 ± 0.78 | |
| Insula | 5.19 ± 0.29 | |
| Limbic Lobe | 5.01 ± 0.51 | |
| Mesencephalon | 5.21 ± 0.57 | |
| Myelencephalon | 5.01 ± 0.58 | |
| Occipital Lobe | 5.06 ± 0.62 | |
| Parietal Lobe | 5.1 ± 0.52 | |
| Pontine Tegmentum | 4.97 ± 0.53 | |
| Striatum | 4.4 ± 0.51 | |
| Subthalamus | 4.71 ± 0.41 | |
| Temporal Lobe | 5.16 ± 0.42 | |
| Thalamus | 5.1 ± 0.52 | |
| White Matter | 4.25 ± 0.39 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| C80638 | CB | Cerebellum | 0.52 | |
| 1.06 | | |||
| C80638 | CTX | Cerebral cortex | 0.12 | |
| 0.13 | | |||
| C80638 | HIP | Hippocampal region | 0.05 | |
| 0.05 | | |||
| C80638 | HPF | Hippocampal formation | 0.07 | |
| 0.16 | | |||
| C80638 | HY | Hypothalamus | 0.06 | |
| 0.15 | | |||
| C80638 | LSX | Lateral septal complex | 0.15 | |
| 0.1 | | |||
| C80638 | MB | Midbrain | 0.88 | |
| 1.2 | | |||
| C80638 | MY | Medulla | 0.5 | |
| 0.46 | | |||
| C80638 | OLF | Olfactory bulb | 0.08 | |
| 0.08 | | |||
| C80638 | P | Pons | 0.18 | |
| 0.28 | | |||
| C80638 | PAL | Pallidum | 0.03 | |
| 0.02 | | |||
| C80638 | RHP | Retrohippocampal region | 0.1 | |
| 0.34 | | |||
| C80638 | sAMY | Striatum-like amygdalar nuclei | 0.02 | |
| 0 | | |||
| C80638 | STR | Striatum | 0.04 | |
| 0.04 | | |||
| C80638 | STRd | Striatum dorsal region | 0.03 | |
| 0.02 | | |||
| C80638 | STRv | Striatum ventral region | 0.04 | |
| 0.06 | | |||
| C80638 | TH | Thalamus | 0.06 | |
| 0.07 | |