Annotation Detail for EGFLAM
Basic Information Top
| Gene Symbol: | EGFLAM ( AGRINL,AGRNL,FLJ39155 ) |
|---|---|
| Gene Full Name: | EGF-like, fibronectin type III and laminin G domains |
| Band: | 5p13.2-p13.1 |
| Quick Links | Entrez ID:133584; OMIM: NA; Uniprot ID:EGFLA_HUMAN; ENSEMBL ID: ENSG00000164318; HGNC ID: 26810 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.20103
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 20 / 564012 | 35 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 79 / 1939121 | 40 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 7 / 263845 | 26 | |
| glioma | 1 / 106883 | 9 |  |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 117 / 3360307 | 34 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 |  |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 13 / 1100989 | 11 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 17 / 211054 | 80 | |
| heart | 1 / 89626 | 11 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 14 / 336974 | 41 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 35 / 280825 | 124 | |
| prostate | 16 / 189345 | 84 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 0 / 96619 | 0 | |
| testis | 14 / 330442 | 42 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 10 / 232878 | 42 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_6228_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.17 ± 1.11 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.7 ± 0.33 | |
| Basal Part of Pons | 3 ± 0.54 | |
| Cerebellar Cortex | 2.45 ± 0.77 | |
| Cerebellar Nuclei | 2.78 ± 0.9 | |
| Claustrum | 3.44 ± 0.88 | |
| Epithalamus | 2.37 ± 0.98 | |
| Frontal Lobe | 2.61 ± 0.86 | |
| Globus Pallidus | 3.16 ± 0.92 | |
| Hypothalamus | 2.56 ± 1.14 | |
| Insula | 2.67 ± 0.88 | |
| Limbic Lobe | 2.79 ± 0.8 | |
| Mesencephalon | 2.84 ± 0.78 | |
| Myelencephalon | 2.9 ± 0.76 | |
| Occipital Lobe | 2.72 ± 0.88 | |
| Parietal Lobe | 2.95 ± 0.78 | |
| Pontine Tegmentum | 2.73 ± 0.96 | |
| Striatum | 3.12 ± 0.82 | |
| Subthalamus | 3.04 ± 0.3 | |
| Temporal Lobe | 2.74 ± 0.84 | |
| Thalamus | 2.99 ± 0.69 | |
| White Matter | 3.49 ± 0.71 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| AU040377 | CB | Cerebellum | 3.34 | |
| 4.26 | | |||
| AU040377 | CTX | Cerebral cortex | 1.68 | |
| 1.58 | | |||
| AU040377 | HIP | Hippocampal region | 1.74 | |
| 2.48 | | |||
| AU040377 | HPF | Hippocampal formation | 1.9 | |
| 2.22 | | |||
| AU040377 | HY | Hypothalamus | 1.7 | |
| 1.72 | | |||
| AU040377 | LSX | Lateral septal complex | 3.14 | |
| 4.4 | | |||
| AU040377 | MB | Midbrain | 3.5 | |
| 3.8 | | |||
| AU040377 | MY | Medulla | 3.85 | |
| 4.36 | | |||
| AU040377 | OLF | Olfactory bulb | 3.84 | |
| 3.66 | | |||
| AU040377 | P | Pons | 4.49 | |
| 5.68 | | |||
| AU040377 | PAL | Pallidum | 0.82 | |
| 1 | | |||
| AU040377 | RHP | Retrohippocampal region | 2.15 | |
| 1.71 | | |||
| AU040377 | sAMY | Striatum-like amygdalar nuclei | 0.8 | |
| 0.83 | | |||
| AU040377 | STR | Striatum | 1.34 | |
| 1.21 | | |||
| AU040377 | STRd | Striatum dorsal region | 1.39 | |
| 1.08 | | |||
| AU040377 | STRv | Striatum ventral region | 0.87 | |
| 0.78 | | |||
| AU040377 | TH | Thalamus | 2.26 | |
| 2.22 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp01428124 | 9 | 196 | 204 | IQMDSMVIK | Peptide Atlas |