Annotation Detail for C5orf33
Basic Information Top
| Gene Symbol: | C5orf33 ( FLJ30596,MGC43298 ) |
|---|---|
| Gene Full Name: | chromosome 5 open reading frame 33 |
| Band: | 5p13.2 |
| Quick Links | Entrez ID:133686; OMIM: NA; Uniprot ID:CE033_HUMAN; ENSEMBL ID: ENSG00000152620; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.81907
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 3 / 62319 | 48 |  |
| fetus | 18 / 564012 | 31 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 54 / 1939121 | 27 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 5 / 263845 | 18 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 4 / 136302 | 29 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 8 / 96359 | 83 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 6 / 97250 | 61 | |
| normal | 119 / 3360307 | 35 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 40 / 1100989 | 36 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 7 / 215722 | 32 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 1 / 211054 | 4 | |
| heart | 1 / 89626 | 11 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 8 / 211777 | 37 | |
| larynx | 0 / 24145 | 0 | |
| liver | 19 / 207743 | 91 | |
| lung | 7 / 336974 | 20 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 9 / 91610 | 98 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 4 / 67052 | 59 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 14 / 330442 | 42 | |
| thymus | 4 / 81131 | 49 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P337168
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.32 ± 0.54 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.46 ± 0.19 | |
| Basal Part of Pons | 6.57 ± 0.3 | |
| Cerebellar Cortex | 6.82 ± 0.2 | |
| Cerebellar Nuclei | 6.46 ± 0.44 | |
| Claustrum | 6.64 ± 0.56 | |
| Epithalamus | 8.17 ± 0.39 | |
| Frontal Lobe | 7.26 ± 0.38 | |
| Globus Pallidus | 7.93 ± 0.32 | |
| Hypothalamus | 7.34 ± 0.21 | |
| Insula | 7.36 ± 0.41 | |
| Limbic Lobe | 7.24 ± 0.43 | |
| Mesencephalon | 7.34 ± 0.41 | |
| Myelencephalon | 7.27 ± 0.47 | |
| Occipital Lobe | 7 ± 0.45 | |
| Parietal Lobe | 7.17 ± 0.37 | |
| Pontine Tegmentum | 7.26 ± 0.37 | |
| Striatum | 7.52 ± 0.32 | |
| Subthalamus | 6.88 ± 0.3 | |
| Temporal Lobe | 7.2 ± 0.31 | |
| Thalamus | 7.27 ± 0.33 | |
| White Matter | 6.56 ± 0.2 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 1110020G09Rik | CB | Cerebellum | 2.09 | |
| 3.94 | | |||
| 1110020G09Rik | CTX | Cerebral cortex | 0.64 | |
| 0.79 | | |||
| 1110020G09Rik | HIP | Hippocampal region | 1.99 | |
| 2.57 | | |||
| 1110020G09Rik | HPF | Hippocampal formation | 1.46 | |
| 1.71 | | |||
| 1110020G09Rik | HY | Hypothalamus | 0.95 | |
| 1.28 | | |||
| 1110020G09Rik | LSX | Lateral septal complex | 0.07 | |
| 0.12 | | |||
| 1110020G09Rik | MB | Midbrain | 0.81 | |
| 1.35 | | |||
| 1110020G09Rik | MY | Medulla | 0.93 | |
| 1.38 | | |||
| 1110020G09Rik | OLF | Olfactory bulb | 1.56 | |
| 1.24 | | |||
| 1110020G09Rik | P | Pons | 0.33 | |
| 0.55 | | |||
| 1110020G09Rik | PAL | Pallidum | 0.16 | |
| 0.28 | | |||
| 1110020G09Rik | RHP | Retrohippocampal region | 0.52 | |
| 0.46 | | |||
| 1110020G09Rik | sAMY | Striatum-like amygdalar nuclei | 0.36 | |
| 0.27 | | |||
| 1110020G09Rik | STR | Striatum | 1.97 | |
| 2.99 | | |||
| 1110020G09Rik | STRd | Striatum dorsal region | 0.41 | |
| 0.61 | | |||
| 1110020G09Rik | STRv | Striatum ventral region | 8.53 | |
| 11.82 | | |||
| 1110020G09Rik | TH | Thalamus | 2.03 | |
| 3 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| CE033_HUMAN_187 | 24 | 187 | 210 | SEGHLCLPVRYTHSFPEALQKFYR | PRIDE |
| PAp00011552 | 13 | 142 | 154 | SSGLNLCTGTGSK | Peptide Atlas |