Annotation Detail for CCDC127
Basic Information Top
| Gene Symbol: | CCDC127 ( FLJ25701 ) |
|---|---|
| Gene Full Name: | coiled-coil domain containing 127 |
| Band: | 5p15.33 |
| Quick Links | Entrez ID:133957; OMIM: NA; Uniprot ID:CC127_HUMAN; ENSEMBL ID: ENSG00000164366; HGNC ID: 30520 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.294145
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 11 / 564012 | 19 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 41 / 1939121 | 21 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 5 / 82823 | 60 |  |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 1 / 106883 | 9 |  |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 5 / 71755 | 69 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 70 / 3360307 | 20 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 7 / 125680 | 55 | |
| prostate cancer | 4 / 102680 | 38 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 3 / 123478 | 24 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 23 / 1100989 | 20 | |
| cervix | 3 / 48171 | 62 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 8 / 215722 | 37 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 5 / 211054 | 23 | |
| heart | 0 / 89626 | 0 | |
| intestine | 8 / 234472 | 34 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 4 / 207743 | 19 | |
| lung | 6 / 336974 | 17 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 6 / 189345 | 31 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 3 / 96619 | 31 | |
| testis | 1 / 330442 | 3 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_23_P41976
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.7 ± 0.24 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.78 ± 0.15 | |
| Basal Part of Pons | 7.85 ± 0.15 | |
| Cerebellar Cortex | 7.65 ± 0.2 | |
| Cerebellar Nuclei | 7.82 ± 0.14 | |
| Claustrum | 7.76 ± 0.27 | |
| Epithalamus | 7.84 ± 0.26 | |
| Frontal Lobe | 7.83 ± 0.23 | |
| Globus Pallidus | 7.85 ± 0.1 | |
| Hypothalamus | 7.96 ± 0.1 | |
| Insula | 7.78 ± 0.2 | |
| Limbic Lobe | 7.61 ± 0.23 | |
| Mesencephalon | 7.81 ± 0.23 | |
| Myelencephalon | 7.74 ± 0.28 | |
| Occipital Lobe | 7.62 ± 0.21 | |
| Parietal Lobe | 7.76 ± 0.25 | |
| Pontine Tegmentum | 7.72 ± 0.24 | |
| Striatum | 7.76 ± 0.21 | |
| Subthalamus | 7.81 ± 0.05 | |
| Temporal Lobe | 7.76 ± 0.23 | |
| Thalamus | 7.75 ± 0.21 | |
| White Matter | 7.64 ± 0.18 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ccdc127 | CB | Cerebellum | 13.69 | |
| 17.71 | | |||
| Ccdc127 | CTX | Cerebral cortex | 15.66 | |
| 13.3 | | |||
| Ccdc127 | HIP | Hippocampal region | 25.4 | |
| 28.97 | | |||
| Ccdc127 | HPF | Hippocampal formation | 22.15 | |
| 23.29 | | |||
| Ccdc127 | HY | Hypothalamus | 13.63 | |
| 13.57 | | |||
| Ccdc127 | LSX | Lateral septal complex | 0.7 | |
| 0.75 | | |||
| Ccdc127 | MB | Midbrain | 7.95 | |
| 10.06 | | |||
| Ccdc127 | MY | Medulla | 17.13 | |
| 27.53 | | |||
| Ccdc127 | OLF | Olfactory bulb | 14.97 | |
| 14.84 | | |||
| Ccdc127 | P | Pons | 20.07 | |
| 26.81 | | |||
| Ccdc127 | PAL | Pallidum | 11.86 | |
| 14.63 | | |||
| Ccdc127 | RHP | Retrohippocampal region | 16.19 | |
| 14.78 | | |||
| Ccdc127 | sAMY | Striatum-like amygdalar nuclei | 12.95 | |
| 10.52 | | |||
| Ccdc127 | STR | Striatum | 5.8 | |
| 5.22 | | |||
| Ccdc127 | STRd | Striatum dorsal region | 3.05 | |
| 2.84 | | |||
| Ccdc127 | STRv | Striatum ventral region | 14.39 | |
| 12.31 | | |||
| Ccdc127 | TH | Thalamus | 9.42 | |
| 8.96 | |