Annotation Detail for NUDCD2
Basic Information Top
| Gene Symbol: | NUDCD2 ( DKFZp686E10109 ) |
|---|---|
| Gene Full Name: | NudC domain containing 2 |
| Band: | 5q34 |
| Quick Links | Entrez ID:134492; OMIM: NA; Uniprot ID:NUDC2_HUMAN; ENSEMBL ID: ENSG00000170584; HGNC ID: 30535 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.140443
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 11 / 564012 | 19 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 44 / 1939121 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 4 / 17475 | 228 |  |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 13 / 263845 | 49 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 1 / 95842 | 10 |  |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 74 / 3360307 | 22 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 5 / 125191 | 39 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 4 / 29757 | 134 |  |
| blood | 0 / 123478 | 0 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 35 / 1100989 | 31 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 3 / 89626 | 33 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 14 / 211777 | 66 | |
| larynx | 2 / 24145 | 82 | |
| liver | 2 / 207743 | 9 | |
| lung | 28 / 336974 | 83 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 3 / 20539 | 146 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 12 / 330442 | 36 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 3 / 52413 | 57 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P360245
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.39 ± 0.32 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.74 ± 0.14 | |
| Basal Part of Pons | 8.77 ± 0.27 | |
| Cerebellar Cortex | 8.45 ± 0.14 | |
| Cerebellar Nuclei | 9.08 ± 0.35 | |
| Claustrum | 8.34 ± 0.61 | |
| Epithalamus | 8.93 ± 0.41 | |
| Frontal Lobe | 8.86 ± 0.32 | |
| Globus Pallidus | 9.57 ± 0.24 | |
| Hypothalamus | 8.81 ± 0.2 | |
| Insula | 8.77 ± 0.29 | |
| Limbic Lobe | 8.46 ± 0.38 | |
| Mesencephalon | 8.71 ± 0.48 | |
| Myelencephalon | 8.71 ± 0.37 | |
| Occipital Lobe | 8.38 ± 0.36 | |
| Parietal Lobe | 8.78 ± 0.31 | |
| Pontine Tegmentum | 8.8 ± 0.31 | |
| Striatum | 8.8 ± 0.23 | |
| Subthalamus | 9.06 ± 0.31 | |
| Temporal Lobe | 8.66 ± 0.29 | |
| Thalamus | 8.75 ± 0.38 | |
| White Matter | 10.32 ± 0.3 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Nudcd2 | CB | Cerebellum | 0.45 | |
| 0.79 | | |||
| Nudcd2 | CTX | Cerebral cortex | 0.35 | |
| 0.71 | | |||
| Nudcd2 | HIP | Hippocampal region | 0.29 | |
| 0.28 | | |||
| Nudcd2 | HPF | Hippocampal formation | 0.25 | |
| 0.25 | | |||
| Nudcd2 | HY | Hypothalamus | 0.79 | |
| 1.35 | | |||
| Nudcd2 | LSX | Lateral septal complex | 0.17 | |
| 0.17 | | |||
| Nudcd2 | MB | Midbrain | 0.47 | |
| 1 | | |||
| Nudcd2 | MY | Medulla | 0.52 | |
| 0.7 | | |||
| Nudcd2 | OLF | Olfactory bulb | 1.24 | |
| 2.62 | | |||
| Nudcd2 | P | Pons | 0.97 | |
| 1.44 | | |||
| Nudcd2 | PAL | Pallidum | 0.18 | |
| 0.59 | | |||
| Nudcd2 | RHP | Retrohippocampal region | 0.14 | |
| 0.21 | | |||
| Nudcd2 | sAMY | Striatum-like amygdalar nuclei | 0.22 | |
| 1.17 | | |||
| Nudcd2 | STR | Striatum | 0.23 | |
| 0.32 | | |||
| Nudcd2 | STRd | Striatum dorsal region | 0.14 | |
| 0.11 | | |||
| Nudcd2 | STRv | Striatum ventral region | 0.6 | |
| 0.52 | | |||
| Nudcd2 | TH | Thalamus | 0.11 | |
| 0.23 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| NUDC2_HUMAN_2 | 7 | 2 | 8 | SAPFEER | PRIDE |
| NUDC2_HUMAN_39 | 11 | 39 | 49 | AQDIQCGLQSR | PRIDE |
| PAp00009306 | 11 | 40 | 50 | AQDIQCGLQSR | Peptide Atlas |