Annotation Detail for STXBP5
Basic Information Top
| Gene Symbol: | STXBP5 ( FLJ30922,LGL3,LLGL3,MGC141942,MGC141968,Nbla04300 ) |
|---|---|
| Gene Full Name: | syntaxin binding protein 5 (tomosyn) |
| Band: | 6q24.3 |
| Quick Links | Entrez ID:134957; OMIM: 604586; Uniprot ID:STXB5_HUMAN; ENSEMBL ID: ENSG00000164506; HGNC ID: 19665 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.93534
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 12 / 564012 | 21 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 58 / 1939121 | 29 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 1 / 17290 | 57 |  |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 9 / 263845 | 34 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 5 / 95842 | 52 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 93 / 3360307 | 27 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 1 / 123478 | 8 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 6 / 48801 | 122 | |
| brain | 21 / 1100989 | 19 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 3 / 211054 | 14 | |
| heart | 0 / 89626 | 0 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 6 / 336974 | 17 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 7 / 91610 | 76 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 11 / 214812 | 51 | |
| parathyroid | 12 / 20539 | 584 |  |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 8 / 280825 | 28 | |
| prostate | 5 / 189345 | 26 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 3 / 210574 | 14 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 20 / 330442 | 60 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_615_PI416408490
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.74 ± 0.36 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.05 ± 0.2 | |
| Basal Part of Pons | 8.52 ± 0.36 | |
| Cerebellar Cortex | 8.1 ± 0.4 | |
| Cerebellar Nuclei | 8.14 ± 0.37 | |
| Claustrum | 9.27 ± 0.39 | |
| Epithalamus | 7.59 ± 0.6 | |
| Frontal Lobe | 8.29 ± 0.49 | |
| Globus Pallidus | 7.85 ± 0.23 | |
| Hypothalamus | 8.39 ± 0.4 | |
| Insula | 8.32 ± 0.36 | |
| Limbic Lobe | 8.66 ± 0.47 | |
| Mesencephalon | 8.32 ± 0.4 | |
| Myelencephalon | 8.29 ± 0.44 | |
| Occipital Lobe | 8.56 ± 0.48 | |
| Parietal Lobe | 8.38 ± 0.49 | |
| Pontine Tegmentum | 8.2 ± 0.43 | |
| Striatum | 8.26 ± 0.41 | |
| Subthalamus | 8.2 ± 0.17 | |
| Temporal Lobe | 8.26 ± 0.4 | |
| Thalamus | 8.1 ± 0.4 | |
| White Matter | 7.3 ± 0.69 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Stxbp5 | CB | Cerebellum | 40.05 | |
| 51.62 | | |||
| Stxbp5 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Stxbp5 | HIP | Hippocampal region | 100 | |
| 100 | | |||
| Stxbp5 | HPF | Hippocampal formation | 100 | |
| 100 | | |||
| Stxbp5 | HY | Hypothalamus | 58.07 | |
| 51.14 | | |||
| Stxbp5 | LSX | Lateral septal complex | 62.39 | |
| 48.78 | | |||
| Stxbp5 | MB | Midbrain | 70.45 | |
| 71.11 | | |||
| Stxbp5 | MY | Medulla | 52.46 | |
| 61.3 | | |||
| Stxbp5 | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| Stxbp5 | P | Pons | 48.79 | |
| 55.15 | | |||
| Stxbp5 | PAL | Pallidum | 54.37 | |
| 52.71 | | |||
| Stxbp5 | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Stxbp5 | sAMY | Striatum-like amygdalar nuclei | 79.17 | |
| 68 | | |||
| Stxbp5 | STR | Striatum | 96.2 | |
| 78.93 | | |||
| Stxbp5 | STRd | Striatum dorsal region | 100 | |
| 81.08 | | |||
| Stxbp5 | STRv | Striatum ventral region | 100 | |
| 88.16 | | |||
| Stxbp5 | TH | Thalamus | 62.32 | |
| 57.72 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00038747 | 25 | 9 | 33 | VLDGLTAGSSSASQQQQQQHPPGNR | Peptide Atlas |