AutismKB 2.0

Annotation Detail for CD109


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Basic Information Top
Gene Symbol:CD109 ( CPAMD7,DKFZp762L1111,FLJ38569,FLJ41966,RP11-525G3.1 )
Gene Full Name: CD109 molecule
Band: 6q13
Quick LinksEntrez ID:135228; OMIM: 608859; Uniprot ID:CD109_HUMAN; ENSEMBL ID: ENSG00000156535; HGNC ID: 21685
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus21 / 56401237
neonate2 / 3109764
infant0 / 236200 
juvenile0 / 555560 
adult111 / 193912157
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor3 / 9417831
cervical tumor0 / 343660 
chondrosarcoma13 / 82823156
colorectal tumor3 / 11424626
esophageal tumor6 / 17290347
gastrointestinal tumor0 / 1193690 
germ cell tumor4 / 26384515
glioma1 / 1068839
head and neck tumor2 / 13630214
kidney tumor5 / 6895972
leukemia0 / 958420 
liver tumor2 / 9635920
lung tumor2 / 10312719
lymphoma0 / 717550 
non-neoplasia5 / 9725051
normal99 / 336030729
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor3 / 12494924
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland0 / 331970 
ascites0 / 400150 
bladder1 / 2975733
blood1 / 1234788
bone8 / 71655111
bone marrow0 / 488010 
brain11 / 11009899
cervix2 / 4817141
connective tissue10 / 14925566
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus6 / 20209296
eye2 / 2110549
heart2 / 8962622
intestine4 / 23447217
kidney18 / 21177784
larynx0 / 241450 
liver4 / 20774319
lung12 / 33697435
lymph0 / 442700 
lymph node0 / 916100 
mammary gland5 / 15327132
mouth3 / 6705244
muscle3 / 10771527
nerve0 / 157680 
ovary0 / 1020510 
pancreas1 / 2148124
parathyroid45 / 205392190
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta9 / 28082532
prostate1 / 1893455
salivary gland0 / 201550 
skin10 / 21057447
spleen0 / 539520 
stomach0 / 966190 
testis6 / 33044218
thymus2 / 8113124
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord2 / 13680146
uterus13 / 23287855
vascular9 / 51780173
Microarray in BioGPS Top
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P55092
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.54 ± 0.73
Basal Forebrain3.56 ± 0.52
Basal Part of Pons2.39 ± 0.5
Cerebellar Cortex2.57 ± 0.42
Cerebellar Nuclei3.71 ± 0.71
Claustrum3.21 ± 0.66
Epithalamus5.49 ± 0.82
Frontal Lobe3.05 ± 0.82
Globus Pallidus5.1 ± 0.77
Hypothalamus3.25 ± 1.11
Insula3 ± 0.83
Limbic Lobe3.15 ± 0.85
Mesencephalon3.57 ± 0.71
Myelencephalon3.45 ± 0.85
Occipital Lobe3.77 ± 1.11
Parietal Lobe3.3 ± 0.74
Pontine Tegmentum3.54 ± 0.75
Striatum4.1 ± 0.84
Subthalamus3.14 ± 0.06
Temporal Lobe3.09 ± 0.81
Thalamus3.4 ± 0.66
White Matter3.2 ± 0.64
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Cd109CBCerebellum1.79
3.47
Cd109CTXCerebral cortex1.02
1.24
Cd109HIPHippocampal region3.3
4.64
Cd109HPFHippocampal formation2.68
3.34
Cd109HYHypothalamus0.1
0.16
Cd109LSXLateral septal complex0.12
0.11
Cd109MBMidbrain1.29
1.84
Cd109MYMedulla0.96
1.57
Cd109OLFOlfactory bulb1.93
1.49
Cd109PPons0.21
0.34
Cd109PALPallidum0.05
0.03
Cd109RHPRetrohippocampal region1.82
1.61
Cd109sAMYStriatum-like amygdalar nuclei0.21
0.26
Cd109STRStriatum0.33
0.3
Cd109STRdStriatum dorsal region0.46
0.42
Cd109STRvStriatum ventral region0.04
0.02
Cd109THThalamus1.12
1.5
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
CD109_HUMAN_1032 28 1032 1059 VIHSELQGGNKSPVTLTAYIVTSLLGYR PRIDE
CD109_HUMAN_1043 17 1043 1059 SPVTLTAYIVTSLLGYR PRIDE
CD109_HUMAN_1189 13 1189 1201 ALSEFAALMNTER PRIDE
CD109_HUMAN_261 15 261 275 GDVTLTFLPLSFWGK PRIDE
CD109_HUMAN_429 15 429 443 IEFPILEDSSELQLK PRIDE
CD109_HUMAN_577 17 577 593 ISVTQPDSIVGIVAVDK PRIDE
CD109_HUMAN_663 24 663 686 FMEENEGHIVDIHDFSLGSSPHVR PRIDE
CD109_HUMAN_86 19 86 104 TLTLPSLPLNSADEIYELR PRIDE
CD109_HUMAN_994 18 994 1011 CFLEADPYIDIDQNVLHR PRIDE
PAp00009453 18 995 1012 CFLEADPYIDIDQNVLHR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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