Annotation Detail for VPS37A
Basic Information Top
| Gene Symbol: | VPS37A ( FLJ32642,FLJ42616,HCRP1,PQBP2 ) |
|---|---|
| Gene Full Name: | vacuolar protein sorting 37 homolog A (S. cerevisiae) |
| Band: | 8p22 |
| Quick Links | Entrez ID:137492; OMIM: 609927; Uniprot ID:VP37A_HUMAN; ENSEMBL ID: ENSG00000155975; HGNC ID: 24928 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.343873
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 23 / 564012 | 40 | |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 3 / 55556 | 53 |  |
| adult | 84 / 1939121 | 43 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 9 / 94178 | 95 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 13 / 263845 | 49 | |
| glioma | 10 / 106883 | 93 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 8 / 68959 | 116 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 5 / 96359 | 51 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 8 / 97250 | 82 | |
| normal | 154 / 3360307 | 45 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 4 / 104616 | 38 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 9 / 90257 | 99 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 4 / 33197 | 120 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 2 / 29757 | 67 | |
| blood | 4 / 123478 | 32 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 3 / 48801 | 61 | |
| brain | 60 / 1100989 | 54 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 7 / 215722 | 32 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 8 / 211054 | 37 | |
| heart | 2 / 89626 | 22 | |
| intestine | 9 / 234472 | 38 | |
| kidney | 13 / 211777 | 61 | |
| larynx | 0 / 24145 | 0 | |
| liver | 7 / 207743 | 33 | |
| lung | 14 / 336974 | 41 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 16 / 153271 | 104 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 8 / 214812 | 37 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 19 / 280825 | 67 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 3 / 210574 | 14 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 2 / 96619 | 20 | |
| testis | 35 / 330442 | 105 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 16 / 232878 | 68 | |
| vascular | 3 / 51780 | 57 | |
Microarray in - Probe name: A_23_P366328
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.27 ± 0.28 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.34 ± 0.17 | |
| Basal Part of Pons | 7.23 ± 0.28 | |
| Cerebellar Cortex | 7.53 ± 0.21 | |
| Cerebellar Nuclei | 7.23 ± 0.27 | |
| Claustrum | 7.24 ± 0.35 | |
| Epithalamus | 7.03 ± 0.26 | |
| Frontal Lobe | 7.3 ± 0.27 | |
| Globus Pallidus | 7.65 ± 0.2 | |
| Hypothalamus | 7.33 ± 0.22 | |
| Insula | 7.23 ± 0.38 | |
| Limbic Lobe | 7.16 ± 0.32 | |
| Mesencephalon | 7.29 ± 0.34 | |
| Myelencephalon | 7.23 ± 0.32 | |
| Occipital Lobe | 6.99 ± 0.28 | |
| Parietal Lobe | 7.3 ± 0.26 | |
| Pontine Tegmentum | 7.32 ± 0.3 | |
| Striatum | 7.07 ± 0.27 | |
| Subthalamus | 7.21 ± 0.26 | |
| Temporal Lobe | 7.31 ± 0.25 | |
| Thalamus | 7.33 ± 0.24 | |
| White Matter | 8.14 ± 0.43 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Vps37a | CB | Cerebellum | 26.21 | |
| 29.9 | | |||
| Vps37a | CTX | Cerebral cortex | 63.29 | |
| 43.08 | | |||
| Vps37a | HIP | Hippocampal region | 34.47 | |
| 35.12 | | |||
| Vps37a | HPF | Hippocampal formation | 40.17 | |
| 35.57 | | |||
| Vps37a | HY | Hypothalamus | 30.48 | |
| 21.56 | | |||
| Vps37a | LSX | Lateral septal complex | 30.75 | |
| 19.91 | | |||
| Vps37a | MB | Midbrain | 32.61 | |
| 26.56 | | |||
| Vps37a | MY | Medulla | 46.48 | |
| 42.08 | | |||
| Vps37a | OLF | Olfactory bulb | 61 | |
| 45.57 | | |||
| Vps37a | P | Pons | 44.97 | |
| 40.14 | | |||
| Vps37a | PAL | Pallidum | 40.77 | |
| 33.29 | | |||
| Vps37a | RHP | Retrohippocampal region | 50.62 | |
| 36.77 | | |||
| Vps37a | sAMY | Striatum-like amygdalar nuclei | 39.09 | |
| 26.57 | | |||
| Vps37a | STR | Striatum | 40.25 | |
| 26.71 | | |||
| Vps37a | STRd | Striatum dorsal region | 39.06 | |
| 26.14 | | |||
| Vps37a | STRv | Striatum ventral region | 50.79 | |
| 31.63 | | |||
| Vps37a | TH | Thalamus | 44.59 | |
| 33.11 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00498954 | 21 | 336 | 356 | VAAHEAEEESDNIAEDFLEGK | Peptide Atlas |