Annotation Detail for LETM2
Basic Information Top
| Gene Symbol: | LETM2 ( FLJ25409 ) |
|---|---|
| Gene Full Name: | leucine zipper-EF-hand containing transmembrane protein 2 |
| Band: | 8p11.23 |
| Quick Links | Entrez ID:137994; OMIM: NA; Uniprot ID:LETM2_HUMAN; ENSEMBL ID: ENSG00000165046; HGNC ID: 14648 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.696457
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 2 / 62319 | 32 |  |
| fetus | 5 / 564012 | 8 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 9 / 1939121 | 4 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 37 / 3360307 | 11 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 3 / 33197 | 90 |  |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 6 / 1100989 | 5 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 4 / 211054 | 18 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 6 / 336974 | 17 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 12 / 330442 | 36 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_955_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.57 ± 0.79 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.31 ± 0.4 | |
| Basal Part of Pons | 3.89 ± 0.53 | |
| Cerebellar Cortex | 4.8 ± 0.28 | |
| Cerebellar Nuclei | 4.39 ± 0.57 | |
| Claustrum | 4.37 ± 0.72 | |
| Epithalamus | 4.28 ± 0.31 | |
| Frontal Lobe | 4.06 ± 0.6 | |
| Globus Pallidus | 3.9 ± 0.74 | |
| Hypothalamus | 4.27 ± 0.59 | |
| Insula | 3.87 ± 0.38 | |
| Limbic Lobe | 4.1 ± 0.57 | |
| Mesencephalon | 4.37 ± 0.64 | |
| Myelencephalon | 4.18 ± 0.57 | |
| Occipital Lobe | 4.43 ± 0.55 | |
| Parietal Lobe | 4.22 ± 0.6 | |
| Pontine Tegmentum | 4.29 ± 0.7 | |
| Striatum | 3.93 ± 0.62 | |
| Subthalamus | 4.43 ± 0.31 | |
| Temporal Lobe | 4.23 ± 0.62 | |
| Thalamus | 4.33 ± 0.61 | |
| White Matter | 3.48 ± 0.62 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| D030041N04Rik | CB | Cerebellum | 6.18 | |
| 6.84 | | |||
| D030041N04Rik | CTX | Cerebral cortex | 7.35 | |
| 5.13 | | |||
| D030041N04Rik | HIP | Hippocampal region | 4.59 | |
| 4.34 | | |||
| D030041N04Rik | HPF | Hippocampal formation | 7.14 | |
| 6.07 | | |||
| D030041N04Rik | HY | Hypothalamus | 2.53 | |
| 1.71 | | |||
| D030041N04Rik | LSX | Lateral septal complex | 1.58 | |
| 2.2 | | |||
| D030041N04Rik | MB | Midbrain | 3.09 | |
| 2.72 | | |||
| D030041N04Rik | MY | Medulla | 9.18 | |
| 9.09 | | |||
| D030041N04Rik | OLF | Olfactory bulb | 12.81 | |
| 10.1 | | |||
| D030041N04Rik | P | Pons | 6.01 | |
| 5.51 | | |||
| D030041N04Rik | PAL | Pallidum | 3.59 | |
| 2.86 | | |||
| D030041N04Rik | RHP | Retrohippocampal region | 11.52 | |
| 8.58 | | |||
| D030041N04Rik | sAMY | Striatum-like amygdalar nuclei | 0.51 | |
| 0.38 | | |||
| D030041N04Rik | STR | Striatum | 2.49 | |
| 2.16 | | |||
| D030041N04Rik | STRd | Striatum dorsal region | 2.47 | |
| 1.8 | | |||
| D030041N04Rik | STRv | Striatum ventral region | 3.78 | |
| 3.84 | | |||
| D030041N04Rik | TH | Thalamus | 3.44 | |
| 2.43 | |