Annotation Detail for C9orf41
Basic Information Top
| Gene Symbol: | C9orf41 ( FLJ25795 ) |
|---|---|
| Gene Full Name: | chromosome 9 open reading frame 41 |
| Band: | 9q21.13 |
| Quick Links | Entrez ID:138199; OMIM: NA; Uniprot ID:CI041_HUMAN; ENSEMBL ID: ENSG00000156017; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.567688
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 3 / 62319 | 48 | |
| fetus | 5 / 564012 | 8 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 22 / 1939121 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 |  |
| breast (mammary gland) tumor | 1 / 94178 | 10 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 1 / 263845 | 3 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 59 / 3360307 | 17 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 2 / 123478 | 16 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 18 / 1100989 | 16 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 6 / 215722 | 27 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 1 / 211054 | 4 | |
| heart | 0 / 89626 | 0 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 6 / 336974 | 17 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 6 / 91610 | 65 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 11 / 330442 | 33 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 3 / 51780 | 57 | |
Microarray in - Probe name: CUST_122_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.03 ± 0.39 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.9 ± 0.22 | |
| Basal Part of Pons | 5.96 ± 0.18 | |
| Cerebellar Cortex | 6.07 ± 0.23 | |
| Cerebellar Nuclei | 5.58 ± 0.53 | |
| Claustrum | 5.71 ± 0.45 | |
| Epithalamus | 5.68 ± 0.21 | |
| Frontal Lobe | 5.7 ± 0.46 | |
| Globus Pallidus | 5.03 ± 0.43 | |
| Hypothalamus | 5.59 ± 0.29 | |
| Insula | 5.78 ± 0.18 | |
| Limbic Lobe | 5.91 ± 0.47 | |
| Mesencephalon | 5.78 ± 0.57 | |
| Myelencephalon | 5.77 ± 0.52 | |
| Occipital Lobe | 6.05 ± 0.45 | |
| Parietal Lobe | 5.87 ± 0.45 | |
| Pontine Tegmentum | 5.86 ± 0.47 | |
| Striatum | 6.83 ± 0.55 | |
| Subthalamus | 5.77 ± 0.49 | |
| Temporal Lobe | 5.88 ± 0.34 | |
| Thalamus | 5.65 ± 0.49 | |
| White Matter | 5.14 ± 0.17 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 2410127L17Rik | CB | Cerebellum | 23.8 | |
| 22.94 | | |||
| 2410127L17Rik | CTX | Cerebral cortex | 51.9 | |
| 38.31 | | |||
| 2410127L17Rik | HIP | Hippocampal region | 24.83 | |
| 34.16 | | |||
| 2410127L17Rik | HPF | Hippocampal formation | 22.49 | |
| 24.2 | | |||
| 2410127L17Rik | HY | Hypothalamus | 10.59 | |
| 7.73 | | |||
| 2410127L17Rik | LSX | Lateral septal complex | 9.13 | |
| 6.64 | | |||
| 2410127L17Rik | MB | Midbrain | 14.59 | |
| 11.76 | | |||
| 2410127L17Rik | MY | Medulla | 10.7 | |
| 9.3 | | |||
| 2410127L17Rik | OLF | Olfactory bulb | 50.84 | |
| 43.37 | | |||
| 2410127L17Rik | P | Pons | 9.87 | |
| 8.33 | | |||
| 2410127L17Rik | PAL | Pallidum | 6.78 | |
| 4.97 | | |||
| 2410127L17Rik | RHP | Retrohippocampal region | 19.46 | |
| 13.26 | | |||
| 2410127L17Rik | sAMY | Striatum-like amygdalar nuclei | 3.4 | |
| 1.98 | | |||
| 2410127L17Rik | STR | Striatum | 7.42 | |
| 5.2 | | |||
| 2410127L17Rik | STRd | Striatum dorsal region | 5.1 | |
| 3.61 | | |||
| 2410127L17Rik | STRv | Striatum ventral region | 16.5 | |
| 10.84 | | |||
| 2410127L17Rik | TH | Thalamus | 17.41 | |
| 12.46 | |