AutismKB 2.0

Annotation Detail for CRAT


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Basic Information Top
Gene Symbol:CRAT ( CAT1 )
Gene Full Name: carnitine O-acetyltransferase
Band: 9q34.11
Quick LinksEntrez ID:1384; OMIM: 600184; Uniprot ID:CACP_HUMAN; ENSEMBL ID: ENSG00000095321; HGNC ID: 2342
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus23 / 56401240
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult131 / 193912167
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor10 / 94178106
cervical tumor0 / 343660 
chondrosarcoma3 / 8282336
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor10 / 11936983
germ cell tumor3 / 26384511
glioma11 / 106883102
head and neck tumor7 / 13630251
kidney tumor2 / 6895929
leukemia24 / 95842250
liver tumor3 / 9635931
lung tumor11 / 103127106
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal151 / 336030744
ovarian tumor5 / 7668265
pancreatic tumor9 / 10461686
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer9 / 10268087
retinoblastoma0 / 463560 
skin tumor3 / 12494924
soft tissue/muscle tissue tumor7 / 12519155
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites1 / 4001524
bladder1 / 2975733
blood2 / 12347816
bone2 / 7165527
bone marrow23 / 48801471
brain32 / 110098929
cervix2 / 4817141
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye10 / 21105447
heart1 / 8962611
intestine8 / 23447234
kidney5 / 21177723
larynx1 / 2414541
liver11 / 20774352
lung15 / 33697444
lymph0 / 442700 
lymph node0 / 916100 
mammary gland15 / 15327197
mouth0 / 670520 
muscle8 / 10771574
nerve0 / 157680 
ovary3 / 10205129
pancreas13 / 21481260
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta8 / 28082528
prostate9 / 18934547
salivary gland6 / 20155297
skin40 / 210574189
spleen1 / 5395218
stomach9 / 9661993
testis17 / 33044251
thymus2 / 8113124
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus13 / 23287855
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 209522_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts26.85
Adipocyte114.3
AdrenalCortex45.25
Adrenalgland69.45
Amygdala110.75
Appendix47.2
AtrioventricularNode28.1
BDCA4+_DentriticCells56.55
Bonemarrow58
BronchialEpithelialCells52.7
CD105+_Endothelial160.15
CD14+_Monocytes48.6
CD19+_BCells(neg._sel.)39
CD33+_Myeloid90.45
CD34+115
CD4+_Tcells31.8
CD56+_NKCells97.95
CD71+_EarlyErythroid305.05
CD8+_Tcells30.75
CardiacMyocytes83.2
Caudatenucleus34.95
Cerebellum39.7
CerebellumPeduncles51.4
CiliaryGanglion23.05
CingulateCortex39.9
Colorectaladenocarcinoma166.75
DorsalRootGanglion32.5
FetalThyroid54.5
Fetalbrain48.9
Fetalliver54.9
Fetallung38.15
GlobusPallidus27.45
Heart308.1
Hypothalamus54.95
Kidney61.4
Leukemia_chronicMyelogenousK-56233.4
Leukemia_promyelocytic-HL-6024.45
Leukemialymphoblastic(MOLT-4)21.8
Liver988.25
Lung123.75
Lymphnode34.65
Lymphoma_burkitts(Daudi)35.65
Lymphoma_burkitts(Raji)56.95
MedullaOblongata45.15
OccipitalLobe40.25
OlfactoryBulb28.95
Ovary30.8
Pancreas91.3
PancreaticIslet60.25
ParietalLobe50.95
Pituitary39.05
Placenta85.65
Pons37.1
PrefrontalCortex90.2
Prostate393.7
Salivarygland31.75
SkeletalMuscle86.5
Skin34.6
SmoothMuscle92.15
Spinalcord49.4
SubthalamicNucleus41.45
SuperiorCervicalGanglion51.3
TemporalLobe51.7
Testis1113.95
TestisGermCell540.8
TestisIntersitial919.3
TestisLeydigCell401.7
TestisSeminiferousTubule390.65
Thalamus47.3
Thymus37.4
Thyroid263.35
Tongue62.05
Tonsil32.1
Trachea34.75
TrigeminalGanglion40.65
Uterus82.85
UterusCorpus41.95
WholeBlood50.3
Wholebrain77.7
colon121.05
pineal_day29.58
pineal_night31.48
retina245.4
small_intestine156.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_7842_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.1 ± 0.62
Basal Forebrain2.96 ± 0.81
Basal Part of Pons2.57 ± 0.67
Cerebellar Cortex2.73 ± 0.57
Cerebellar Nuclei3.12 ± 0.54
Claustrum2.91 ± 0.65
Epithalamus2.49 ± 0.71
Frontal Lobe2.89 ± 0.58
Globus Pallidus3.4 ± 0.41
Hypothalamus2.4 ± 0.58
Insula2.67 ± 0.86
Limbic Lobe2.89 ± 0.65
Mesencephalon3 ± 0.59
Myelencephalon2.9 ± 0.59
Occipital Lobe2.56 ± 0.75
Parietal Lobe2.82 ± 0.53
Pontine Tegmentum2.87 ± 0.57
Striatum2.53 ± 0.6
Subthalamus2.89 ± 0.32
Temporal Lobe2.84 ± 0.55
Thalamus3.02 ± 0.51
White Matter2.42 ± 0.26
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
CratCBCerebellum9.05
8.41
CratCTXCerebral cortex5.76
2.96
CratHIPHippocampal region15.44
7.09
CratHPFHippocampal formation13.54
6.36
CratHYHypothalamus6.54
3.36
CratLSXLateral septal complex9.26
4.05
CratMBMidbrain6.52
4.05
CratMYMedulla7.31
5.69
CratOLFOlfactory bulb14.26
7.17
CratPPons7.99
5.89
CratPALPallidum7.05
3.96
CratRHPRetrohippocampal region10.12
5.43
CratsAMYStriatum-like amygdalar nuclei8.41
3.96
CratSTRStriatum4.1
1.87
CratSTRdStriatum dorsal region1.89
0.95
CratSTRvStriatum ventral region7.17
2.76
CratTHThalamus7.97
4.06
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
CACP_HUMAN_29 9 29 37 KAHQDALPR PRIDE
CACP_HUMAN_302 14 302 315 SHVAGQMLHGGGSR PRIDE
CACP_HUMAN_370 10 370 379 SPMVPLPMPK PRIDE
PAp00077501 14 302 315 SHVAGQMLHGGGSR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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