Annotation Detail for PTPDC1
Basic Information Top
| Gene Symbol: | PTPDC1 ( FLJ42922,PTP9Q22 ) |
|---|---|
| Gene Full Name: | protein tyrosine phosphatase domain containing 1 |
| Band: | 9q22.32 |
| Quick Links | Entrez ID:138639; OMIM: NA; Uniprot ID:PTPC1_HUMAN; ENSEMBL ID: ENSG00000158079; HGNC ID: 30184 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.437943
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 10 / 564012 | 17 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 24 / 1939121 | 12 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 2 / 263845 | 7 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 5 / 97250 | 51 |  |
| normal | 67 / 3360307 | 19 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 48 / 1100989 | 43 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 3 / 336974 | 8 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 3 / 280825 | 10 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 10 / 330442 | 30 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_1489_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.36 ± 0.56 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.17 ± 0.35 | |
| Basal Part of Pons | 6.74 ± 0.42 | |
| Cerebellar Cortex | 6.55 ± 0.23 | |
| Cerebellar Nuclei | 7.1 ± 0.35 | |
| Claustrum | 6.52 ± 0.39 | |
| Epithalamus | 6.72 ± 0.36 | |
| Frontal Lobe | 6.61 ± 0.42 | |
| Globus Pallidus | 7.31 ± 0.27 | |
| Hypothalamus | 6.5 ± 0.4 | |
| Insula | 6.47 ± 0.32 | |
| Limbic Lobe | 6.73 ± 0.46 | |
| Mesencephalon | 6.57 ± 0.46 | |
| Myelencephalon | 6.7 ± 0.39 | |
| Occipital Lobe | 6.8 ± 0.41 | |
| Parietal Lobe | 6.67 ± 0.38 | |
| Pontine Tegmentum | 6.82 ± 0.39 | |
| Striatum | 7.59 ± 0.36 | |
| Subthalamus | 7.05 ± 0.18 | |
| Temporal Lobe | 6.64 ± 0.27 | |
| Thalamus | 6.65 ± 0.33 | |
| White Matter | 8.22 ± 0.1 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| AW456874 | CB | Cerebellum | 1.57 | |
| 2.1 | | |||
| AW456874 | CTX | Cerebral cortex | 1.49 | |
| 1.38 | | |||
| AW456874 | HIP | Hippocampal region | 3.53 | |
| 3.24 | | |||
| AW456874 | HPF | Hippocampal formation | 3.8 | |
| 3.2 | | |||
| AW456874 | HY | Hypothalamus | 0.5 | |
| 0.55 | | |||
| AW456874 | LSX | Lateral septal complex | 13.28 | |
| 10.33 | | |||
| AW456874 | MB | Midbrain | 0.81 | |
| 1.15 | | |||
| AW456874 | MY | Medulla | 1.28 | |
| 1.29 | | |||
| AW456874 | OLF | Olfactory bulb | 3.25 | |
| 2.93 | | |||
| AW456874 | P | Pons | 1.09 | |
| 1.47 | | |||
| AW456874 | PAL | Pallidum | 1.1 | |
| 0.81 | | |||
| AW456874 | RHP | Retrohippocampal region | 4.41 | |
| 3.27 | | |||
| AW456874 | sAMY | Striatum-like amygdalar nuclei | 4.23 | |
| 3.33 | | |||
| AW456874 | STR | Striatum | 1.7 | |
| 1.31 | | |||
| AW456874 | STRd | Striatum dorsal region | 0.5 | |
| 0.42 | | |||
| AW456874 | STRv | Striatum ventral region | 0.52 | |
| 0.44 | | |||
| AW456874 | TH | Thalamus | 2.2 | |
| 3.06 | |