Annotation Detail for C20orf96
Basic Information Top
| Gene Symbol: | C20orf96 ( FLJ40075,dJ1103G7.2 ) |
|---|---|
| Gene Full Name: | chromosome 20 open reading frame 96 |
| Band: | 20p13 |
| Quick Links | Entrez ID:140680; OMIM: NA; Uniprot ID:CT096_HUMAN; ENSEMBL ID: ENSG00000196476; HGNC ID: 16227 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.348112
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 16 / 564012 | 28 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 42 / 1939121 | 21 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 2 / 263845 | 7 |  |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 7 / 68959 | 101 |  |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 75 / 3360307 | 22 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 6 / 123478 | 48 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 3 / 48801 | 61 | |
| brain | 29 / 1100989 | 26 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 1 / 89626 | 11 | |
| intestine | 6 / 234472 | 25 | |
| kidney | 10 / 211777 | 47 | |
| larynx | 1 / 24145 | 41 | |
| liver | 5 / 207743 | 24 | |
| lung | 1 / 336974 | 2 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 5 / 189345 | 26 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 4 / 53952 | 74 | |
| stomach | 2 / 96619 | 20 | |
| testis | 14 / 330442 | 42 | |
| thymus | 6 / 81131 | 73 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 9 / 232878 | 38 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_151_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.39 ± 0.49 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.2 ± 0.24 | |
| Basal Part of Pons | 5.03 ± 0.42 | |
| Cerebellar Cortex | 4.83 ± 0.44 | |
| Cerebellar Nuclei | 5.08 ± 0.45 | |
| Claustrum | 5.58 ± 0.74 | |
| Epithalamus | 6.18 ± 0.79 | |
| Frontal Lobe | 4.98 ± 0.55 | |
| Globus Pallidus | 5.74 ± 0.16 | |
| Hypothalamus | 4.73 ± 0.35 | |
| Insula | 4.93 ± 0.42 | |
| Limbic Lobe | 5.39 ± 0.49 | |
| Mesencephalon | 5.09 ± 0.56 | |
| Myelencephalon | 5.25 ± 0.57 | |
| Occipital Lobe | 5.72 ± 0.61 | |
| Parietal Lobe | 5.26 ± 0.42 | |
| Pontine Tegmentum | 5.16 ± 0.57 | |
| Striatum | 5.6 ± 0.49 | |
| Subthalamus | 4.82 ± 0.24 | |
| Temporal Lobe | 5.11 ± 0.46 | |
| Thalamus | 5.32 ± 0.45 | |
| White Matter | 5.28 ± 0.34 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 6820408C15Rik | CB | Cerebellum | 3.88 | |
| 4.72 | | |||
| 6820408C15Rik | CTX | Cerebral cortex | 0.8 | |
| 1.01 | | |||
| 6820408C15Rik | HIP | Hippocampal region | 1.8 | |
| 2.55 | | |||
| 6820408C15Rik | HPF | Hippocampal formation | 1.58 | |
| 1.83 | | |||
| 6820408C15Rik | HY | Hypothalamus | 1.36 | |
| 1.35 | | |||
| 6820408C15Rik | LSX | Lateral septal complex | 5.7 | |
| 7.76 | | |||
| 6820408C15Rik | MB | Midbrain | 0.82 | |
| 1.9 | | |||
| 6820408C15Rik | MY | Medulla | 2.7 | |
| 4.1 | | |||
| 6820408C15Rik | OLF | Olfactory bulb | 0.82 | |
| 0.82 | | |||
| 6820408C15Rik | P | Pons | 1.15 | |
| 1.34 | | |||
| 6820408C15Rik | PAL | Pallidum | 0.48 | |
| 0.56 | | |||
| 6820408C15Rik | RHP | Retrohippocampal region | 1.31 | |
| 1.05 | | |||
| 6820408C15Rik | sAMY | Striatum-like amygdalar nuclei | 0.53 | |
| 0.52 | | |||
| 6820408C15Rik | STR | Striatum | 1.23 | |
| 1.55 | | |||
| 6820408C15Rik | STRd | Striatum dorsal region | 0.87 | |
| 1.12 | | |||
| 6820408C15Rik | STRv | Striatum ventral region | 0.69 | |
| 0.71 | | |||
| 6820408C15Rik | TH | Thalamus | 2.58 | |
| 4.74 | |