Annotation Detail for TRIM69
Basic Information Top
| Gene Symbol: | TRIM69 ( HSD34,RNF36,Trif ) |
|---|---|
| Gene Full Name: | tripartite motif-containing 69 |
| Band: | 15q15-q21 |
| Quick Links | Entrez ID:140691; OMIM: NA; Uniprot ID:TRI69_HUMAN; ENSEMBL ID: ENSG00000185880; HGNC ID: 17857 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.489254
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 18 / 564012 | 31 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 85 / 1939121 | 43 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 5 / 17290 | 289 |  |
| gastrointestinal tumor | 5 / 119369 | 41 | |
| germ cell tumor | 9 / 263845 | 34 | |
| glioma | 6 / 106883 | 56 | |
| head and neck tumor | 1 / 136302 | 7 |  |
| kidney tumor | 5 / 68959 | 72 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 3 / 71755 | 41 | |
| non-neoplasia | 7 / 97250 | 71 | |
| normal | 155 / 3360307 | 46 | |
| ovarian tumor | 5 / 76682 | 65 | |
| pancreatic tumor | 5 / 104616 | 47 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 11 / 125191 | 87 | |
| uterine tumor | 5 / 90257 | 55 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 3 / 33197 | 90 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 1 / 29757 | 33 | |
| blood | 8 / 123478 | 64 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 75 / 1100989 | 68 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 13 / 149255 | 87 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 5 / 20209 | 247 | |
| eye | 2 / 211054 | 9 | |
| heart | 2 / 89626 | 22 | |
| intestine | 11 / 234472 | 46 | |
| kidney | 9 / 211777 | 42 | |
| larynx | 1 / 24145 | 41 | |
| liver | 3 / 207743 | 14 | |
| lung | 10 / 336974 | 29 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 14 / 53952 | 259 | |
| stomach | 6 / 96619 | 62 | |
| testis | 24 / 330442 | 72 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 12 / 232878 | 51 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_9339_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.18 ± 0.51 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4 ± 0.39 | |
| Basal Part of Pons | 3.9 ± 0.56 | |
| Cerebellar Cortex | 3.9 ± 0.41 | |
| Cerebellar Nuclei | 4.02 ± 0.32 | |
| Claustrum | 4.42 ± 0.63 | |
| Epithalamus | 3.27 ± 0.77 | |
| Frontal Lobe | 3.92 ± 0.56 | |
| Globus Pallidus | 3.31 ± 0.63 | |
| Hypothalamus | 3.37 ± 0.39 | |
| Insula | 3.99 ± 0.44 | |
| Limbic Lobe | 4.06 ± 0.54 | |
| Mesencephalon | 4.09 ± 0.77 | |
| Myelencephalon | 3.97 ± 0.61 | |
| Occipital Lobe | 4.24 ± 0.66 | |
| Parietal Lobe | 4.11 ± 0.51 | |
| Pontine Tegmentum | 4.01 ± 0.52 | |
| Striatum | 4.34 ± 0.6 | |
| Subthalamus | 3.72 ± 0.88 | |
| Temporal Lobe | 3.95 ± 0.6 | |
| Thalamus | 3.97 ± 0.64 | |
| White Matter | 2.76 ± 0.23 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Rnf36 | CB | Cerebellum | 1.95 | |
| 3.48 | | |||
| Rnf36 | CTX | Cerebral cortex | 2.34 | |
| 2.7 | | |||
| Rnf36 | HIP | Hippocampal region | 1.24 | |
| 1.09 | | |||
| Rnf36 | HPF | Hippocampal formation | 1.23 | |
| 1.45 | | |||
| Rnf36 | HY | Hypothalamus | 0.1 | |
| 0.07 | | |||
| Rnf36 | LSX | Lateral septal complex | 0.2 | |
| 0.77 | | |||
| Rnf36 | MB | Midbrain | 0.34 | |
| 0.51 | | |||
| Rnf36 | MY | Medulla | 1.42 | |
| 1.73 | | |||
| Rnf36 | OLF | Olfactory bulb | 2.32 | |
| 1.64 | | |||
| Rnf36 | P | Pons | 0.59 | |
| 0.82 | | |||
| Rnf36 | PAL | Pallidum | 0.4 | |
| 0.32 | | |||
| Rnf36 | RHP | Retrohippocampal region | 1.16 | |
| 1.47 | | |||
| Rnf36 | sAMY | Striatum-like amygdalar nuclei | 1.58 | |
| 1.12 | | |||
| Rnf36 | STR | Striatum | 1.22 | |
| 0.99 | | |||
| Rnf36 | STRd | Striatum dorsal region | 1.09 | |
| 0.99 | | |||
| Rnf36 | STRv | Striatum ventral region | 1.84 | |
| 1.11 | | |||
| Rnf36 | TH | Thalamus | 4.17 | |
| 5.47 | |