Annotation Detail for RIMS4
Basic Information Top
| Gene Symbol: | RIMS4 ( C20orf190,RIM4,dJ781B1.3 ) |
|---|---|
| Gene Full Name: | regulating synaptic membrane exocytosis 4 |
| Band: | 20q13.12 |
| Quick Links | Entrez ID:140730; OMIM: 611601; Uniprot ID:RIMS4_HUMAN; ENSEMBL ID: ENSG00000101098; HGNC ID: 16183 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.517065
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 27 / 564012 | 47 | |
| neonate | 0 / 31097 | 0 | |
| infant | 6 / 23620 | 254 |  |
| juvenile | 0 / 55556 | 0 | |
| adult | 16 / 1939121 | 8 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 2 / 34366 | 58 |  |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 8 / 263845 | 30 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 90 / 3360307 | 26 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 19 / 125680 | 151 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 3 / 46356 | 64 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 77 / 1100989 | 69 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 4 / 211054 | 18 | |
| heart | 0 / 89626 | 0 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 9 / 336974 | 26 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 18 / 330442 | 54 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_24_P374532
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.12 ± 0.65 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.44 ± 0.8 | |
| Basal Part of Pons | 5.11 ± 0.51 | |
| Cerebellar Cortex | 4.54 ± 0.4 | |
| Cerebellar Nuclei | 4.49 ± 0.58 | |
| Claustrum | 5.38 ± 0.79 | |
| Epithalamus | 4.05 ± 0.54 | |
| Frontal Lobe | 4.66 ± 0.54 | |
| Globus Pallidus | 3.62 ± 0.57 | |
| Hypothalamus | 4.37 ± 0.63 | |
| Insula | 4.61 ± 0.6 | |
| Limbic Lobe | 5.04 ± 0.47 | |
| Mesencephalon | 4.7 ± 0.62 | |
| Myelencephalon | 4.84 ± 0.69 | |
| Occipital Lobe | 5.23 ± 0.53 | |
| Parietal Lobe | 5.01 ± 0.53 | |
| Pontine Tegmentum | 4.66 ± 0.53 | |
| Striatum | 5.57 ± 0.48 | |
| Subthalamus | 4.77 ± 0.83 | |
| Temporal Lobe | 4.88 ± 0.45 | |
| Thalamus | 4.59 ± 0.54 | |
| White Matter | 2.84 ± 0.38 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Rims4 | CB | Cerebellum | 4.95 | |
| 5.02 | | |||
| Rims4 | CTX | Cerebral cortex | 2.79 | |
| 2.22 | | |||
| Rims4 | HIP | Hippocampal region | 7.87 | |
| 8.17 | | |||
| Rims4 | HPF | Hippocampal formation | 6.6 | |
| 6.16 | | |||
| Rims4 | HY | Hypothalamus | 0.15 | |
| 0.1 | | |||
| Rims4 | LSX | Lateral septal complex | 1.27 | |
| 1.15 | | |||
| Rims4 | MB | Midbrain | 0.15 | |
| 0.17 | | |||
| Rims4 | MY | Medulla | 3.57 | |
| 4.24 | | |||
| Rims4 | OLF | Olfactory bulb | 6.88 | |
| 6 | | |||
| Rims4 | P | Pons | 0.31 | |
| 0.42 | | |||
| Rims4 | PAL | Pallidum | 0.15 | |
| 0.1 | | |||
| Rims4 | RHP | Retrohippocampal region | 4.56 | |
| 3.42 | | |||
| Rims4 | sAMY | Striatum-like amygdalar nuclei | 1.12 | |
| 0.66 | | |||
| Rims4 | STR | Striatum | 0.54 | |
| 0.46 | | |||
| Rims4 | STRd | Striatum dorsal region | 0.49 | |
| 0.48 | | |||
| Rims4 | STRv | Striatum ventral region | 0.05 | |
| 0.03 | | |||
| Rims4 | TH | Thalamus | 0.56 | |
| 0.53 | |