AutismKB 2.0

Annotation Detail for CSF1


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Basic Information Top
Gene Symbol:CSF1 ( MCSF,MGC31930 )
Gene Full Name: colony stimulating factor 1 (macrophage)
Band: 1p13.3
Quick LinksEntrez ID:1435; OMIM: 120420; Uniprot ID:CSF1_HUMAN; ENSEMBL ID: ENSG00000184371; HGNC ID: 2432
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus5 / 5640128
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult52 / 193912126
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor4 / 11936933
germ cell tumor6 / 26384522
glioma1 / 1068839
head and neck tumor2 / 13630214
kidney tumor3 / 6895943
leukemia1 / 9584210
liver tumor1 / 9635910
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia4 / 9725041
normal63 / 336030718
ovarian tumor0 / 766820 
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma1 / 4635621
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites3 / 4001574
bladder0 / 297570 
blood1 / 1234788
bone0 / 716550 
bone marrow0 / 488010 
brain30 / 110098927
cervix2 / 4817141
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye4 / 21105418
heart0 / 896260 
intestine1 / 2344724
kidney5 / 21177723
larynx1 / 2414541
liver2 / 2077439
lung9 / 33697426
lymph0 / 442700 
lymph node0 / 916100 
mammary gland5 / 15327132
mouth1 / 6705214
muscle1 / 1077159
nerve1 / 1576863
ovary1 / 1020519
pancreas6 / 21481227
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta6 / 28082521
prostate0 / 1893450 
salivary gland0 / 201550 
skin1 / 2105744
spleen0 / 539520 
stomach1 / 9661910
testis6 / 33044218
thymus7 / 8113186
thyroid0 / 474730 
tonsil0 / 169990 
trachea6 / 52413114
umbilical cord0 / 136800 
uterus8 / 23287834
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 209716_at
Cell line Expression level Expression bar
721_B_lymphoblasts60.25
Adipocyte143.3
AdrenalCortex66.8
Adrenalgland58.55
Amygdala57.3
Appendix85.2
AtrioventricularNode47.55
BDCA4+_DentriticCells44.3
Bonemarrow62.45
BronchialEpithelialCells54.15
CD105+_Endothelial58.75
CD14+_Monocytes51.15
CD19+_BCells(neg._sel.)52.45
CD33+_Myeloid70.7
CD34+75.9
CD4+_Tcells56.3
CD56+_NKCells48.9
CD71+_EarlyErythroid55.7
CD8+_Tcells49.65
CardiacMyocytes72.5
Caudatenucleus53.5
Cerebellum49
CerebellumPeduncles74.9
CiliaryGanglion47.15
CingulateCortex68.75
Colorectaladenocarcinoma57.7
DorsalRootGanglion49.4
FetalThyroid58.5
Fetalbrain54.5
Fetalliver52.4
Fetallung47
GlobusPallidus42.9
Heart102.05
Hypothalamus64.85
Kidney62.35
Leukemia_chronicMyelogenousK-56251.5
Leukemia_promyelocytic-HL-6051.5
Leukemialymphoblastic(MOLT-4)44.8
Liver85.75
Lung64.6
Lymphnode52.8
Lymphoma_burkitts(Daudi)74.45
Lymphoma_burkitts(Raji)83.15
MedullaOblongata54.35
OccipitalLobe52.75
OlfactoryBulb46.9
Ovary40.8
Pancreas47.5
PancreaticIslet62.9
ParietalLobe64.8
Pituitary69.65
Placenta60.45
Pons77.1
PrefrontalCortex75.55
Prostate69
Salivarygland51.2
SkeletalMuscle79.25
Skin48.75
SmoothMuscle66.8
Spinalcord78.05
SubthalamicNucleus55.3
SuperiorCervicalGanglion104.9
TemporalLobe56.5
Testis50.95
TestisGermCell46.45
TestisIntersitial49.95
TestisLeydigCell58.65
TestisSeminiferousTubule50.55
Thalamus64.2
Thymus45.8
Thyroid69.4
Tongue62.35
Tonsil57.6
Trachea49.75
TrigeminalGanglion77.05
Uterus46.35
UterusCorpus53.45
WholeBlood61.3
Wholebrain46.8
colon57.7
pineal_day63.44
pineal_night67.74
retina81.025
small_intestine57.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_12160_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.19 ± 1.06
Basal Forebrain2.24 ± 0.58
Basal Part of Pons1.65 ± 0.47
Cerebellar Cortex1.8 ± 0.69
Cerebellar Nuclei2.47 ± 0.79
Claustrum2.64 ± 0.72
Epithalamus2.68 ± 0.42
Frontal Lobe1.79 ± 0.77
Globus Pallidus2.94 ± 0.62
Hypothalamus2 ± 0.67
Insula1.78 ± 0.61
Limbic Lobe1.84 ± 0.7
Mesencephalon2.21 ± 0.69
Myelencephalon2.06 ± 0.71
Occipital Lobe2.11 ± 0.83
Parietal Lobe1.84 ± 0.58
Pontine Tegmentum1.94 ± 0.73
Striatum2.18 ± 0.67
Subthalamus2.27 ± 0.3
Temporal Lobe1.79 ± 0.66
Thalamus2.01 ± 0.63
White Matter4.45 ± 1.02
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00136114 23 405 427 ISSLRPQGLSNPSTLSAQPQLSR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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