Annotation Detail for ARHGAP42
Basic Information Top
| Gene Symbol: | ARHGAP42 ( FLJ32810,GRAF3,KIAA0621 ) |
|---|---|
| Gene Full Name: | Rho GTPase activating protein 42 |
| Band: | 11q22.1 |
| Quick Links | Entrez ID:143872; OMIM: NA; Uniprot ID:RHG42_HUMAN; ENSEMBL ID: ENSG00000165895; HGNC ID: 26545 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.269837
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 11 / 564012 | 19 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 13 / 1939121 | 6 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 39 / 3360307 | 11 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 3 / 1100989 | 2 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 0 / 89626 | 0 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 2 / 336974 | 5 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 |  |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 8 / 330442 | 24 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_935_PI416573500
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.33 ± 0.51 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.97 ± 0.27 | |
| Basal Part of Pons | 4.55 ± 0.46 | |
| Cerebellar Cortex | 4.86 ± 0.39 | |
| Cerebellar Nuclei | 5.43 ± 0.45 | |
| Claustrum | 5.05 ± 0.47 | |
| Epithalamus | 5.86 ± 0.43 | |
| Frontal Lobe | 5.39 ± 0.55 | |
| Globus Pallidus | 6.73 ± 0.47 | |
| Hypothalamus | 5.73 ± 0.33 | |
| Insula | 5.54 ± 0.46 | |
| Limbic Lobe | 5.34 ± 0.68 | |
| Mesencephalon | 5.75 ± 0.53 | |
| Myelencephalon | 5.54 ± 0.62 | |
| Occipital Lobe | 5.65 ± 0.48 | |
| Parietal Lobe | 5.38 ± 0.54 | |
| Pontine Tegmentum | 5.63 ± 0.41 | |
| Striatum | 5.98 ± 0.42 | |
| Subthalamus | 5.41 ± 0.59 | |
| Temporal Lobe | 5.31 ± 0.45 | |
| Thalamus | 5.7 ± 0.49 | |
| White Matter | 5.02 ± 0.39 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 9030420J04Rik | CB | Cerebellum | 2.7 | |
| 3.74 | | |||
| 9030420J04Rik | CTX | Cerebral cortex | 1.5 | |
| 1.22 | | |||
| 9030420J04Rik | HIP | Hippocampal region | 0.29 | |
| 0.31 | | |||
| 9030420J04Rik | HPF | Hippocampal formation | 0.4 | |
| 0.36 | | |||
| 9030420J04Rik | HY | Hypothalamus | 0.21 | |
| 0.22 | | |||
| 9030420J04Rik | LSX | Lateral septal complex | 0.12 | |
| 0.13 | | |||
| 9030420J04Rik | MB | Midbrain | 0.88 | |
| 1.15 | | |||
| 9030420J04Rik | MY | Medulla | 4.54 | |
| 5.76 | | |||
| 9030420J04Rik | OLF | Olfactory bulb | 1.4 | |
| 1.71 | | |||
| 9030420J04Rik | P | Pons | 0.91 | |
| 0.97 | | |||
| 9030420J04Rik | PAL | Pallidum | 0.08 | |
| 0.06 | | |||
| 9030420J04Rik | RHP | Retrohippocampal region | 0.65 | |
| 0.49 | | |||
| 9030420J04Rik | sAMY | Striatum-like amygdalar nuclei | 0.84 | |
| 0.78 | | |||
| 9030420J04Rik | STR | Striatum | 0.38 | |
| 0.49 | | |||
| 9030420J04Rik | STRd | Striatum dorsal region | 0.23 | |
| 0.38 | | |||
| 9030420J04Rik | STRv | Striatum ventral region | 0.16 | |
| 0.19 | | |||
| 9030420J04Rik | TH | Thalamus | 1.73 | |
| 1.35 | |