Annotation Detail for PRICKLE1
Basic Information Top
| Gene Symbol: | PRICKLE1 ( EPM1B,FLJ31627,FLJ31937,MGC138902,MGC138903,RILP ) |
|---|---|
| Gene Full Name: | prickle homolog 1 (Drosophila) |
| Band: | 12q12 |
| Quick Links | Entrez ID:144165; OMIM: 608500; Uniprot ID:PRIC1_HUMAN; ENSEMBL ID: ENSG00000139174; HGNC ID: 17019 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.720221
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 4 / 564012 | 7 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 11 / 1939121 | 5 | |
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 25 / 564012 | 44 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 57 / 1939121 | 29 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 19 / 3360307 | 5 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 | |
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 25 / 263845 | 94 | |
| glioma | 7 / 106883 | 65 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 114 / 3360307 | 33 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 2 / 1100989 | 1 |  |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 1 / 89626 | 11 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 1 / 24145 | 41 | |
| liver | 2 / 207743 | 9 | |
| lung | 0 / 336974 | 0 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 | |
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 4 / 48801 | 81 | |
| brain | 47 / 1100989 | 42 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 9 / 215722 | 41 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 9 / 211054 | 42 | |
| heart | 6 / 89626 | 66 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 7 / 211777 | 33 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 5 / 336974 | 14 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 3 / 280825 | 10 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 3 / 53952 | 55 | |
| stomach | 1 / 96619 | 10 | |
| testis | 19 / 330442 | 57 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 3 / 52413 | 57 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 12 / 232878 | 51 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_23_P408285
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 9.22 ± 0.37 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.31 ± 0.21 | |
| Basal Part of Pons | 10.16 ± 0.14 | |
| Cerebellar Cortex | 9.07 ± 0.25 | |
| Cerebellar Nuclei | 9.09 ± 0.42 | |
| Claustrum | 9.95 ± 0.23 | |
| Epithalamus | 8.28 ± 0.99 | |
| Frontal Lobe | 9.57 ± 0.5 | |
| Globus Pallidus | 8.01 ± 0.76 | |
| Hypothalamus | 8.9 ± 0.42 | |
| Insula | 9.56 ± 0.28 | |
| Limbic Lobe | 9.59 ± 0.63 | |
| Mesencephalon | 9.07 ± 0.51 | |
| Myelencephalon | 9.3 ± 0.67 | |
| Occipital Lobe | 9.92 ± 0.39 | |
| Parietal Lobe | 9.75 ± 0.48 | |
| Pontine Tegmentum | 9.31 ± 0.47 | |
| Striatum | 8.4 ± 1.03 | |
| Subthalamus | 9.06 ± 0.29 | |
| Temporal Lobe | 9.63 ± 0.4 | |
| Thalamus | 9.99 ± 0.45 | |
| White Matter | 7.56 ± 0.72 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Prickle1 | CB | Cerebellum | 10.07 | |
| 10.58 | | |||
| Prickle1 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Prickle1 | HIP | Hippocampal region | 49.54 | |
| 80.98 | | |||
| Prickle1 | HPF | Hippocampal formation | 49.32 | |
| 64.88 | | |||
| Prickle1 | HY | Hypothalamus | 13.03 | |
| 10.28 | | |||
| Prickle1 | LSX | Lateral septal complex | 10.37 | |
| 8.54 | | |||
| Prickle1 | MB | Midbrain | 15.11 | |
| 13.11 | | |||
| Prickle1 | MY | Medulla | 20.92 | |
| 21.22 | | |||
| Prickle1 | OLF | Olfactory bulb | 58.22 | |
| 50.24 | | |||
| Prickle1 | P | Pons | 15.6 | |
| 14.61 | | |||
| Prickle1 | PAL | Pallidum | 21.52 | |
| 19.05 | | |||
| Prickle1 | RHP | Retrohippocampal region | 48.11 | |
| 43.64 | | |||
| Prickle1 | sAMY | Striatum-like amygdalar nuclei | 33.5 | |
| 26.99 | | |||
| Prickle1 | STR | Striatum | 22.27 | |
| 19.29 | | |||
| Prickle1 | STRd | Striatum dorsal region | 23.56 | |
| 21.41 | | |||
| Prickle1 | STRv | Striatum ventral region | 19.54 | |
| 14.9 | | |||
| Prickle1 | TH | Thalamus | 72.24 | |
| 73.22 | |