Annotation Detail for LYRM5
Basic Information Top
| Gene Symbol: | LYRM5 ( - ) |
|---|---|
| Gene Full Name: | LYR motif containing 5 |
| Band: | 12p12.1 |
| Quick Links | Entrez ID:144363; OMIM: NA; Uniprot ID:LYRM5_HUMAN; ENSEMBL ID: ENSG00000205707; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.209151
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 18 / 564012 | 31 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 60 / 1939121 | 30 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 |  |
| bladder carcinoma | 10 / 17475 | 572 |  |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 8 / 263845 | 30 | |
| glioma | 6 / 106883 | 56 | |
| head and neck tumor | 1 / 136302 | 7 |  |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 13 / 95842 | 135 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 5 / 97250 | 51 | |
| normal | 191 / 3360307 | 56 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 3 / 33197 | 90 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 10 / 29757 | 336 | |
| blood | 2 / 123478 | 16 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 16 / 48801 | 327 | |
| brain | 50 / 1100989 | 45 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 6 / 89626 | 66 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 10 / 211777 | 47 | |
| larynx | 0 / 24145 | 0 | |
| liver | 20 / 207743 | 96 | |
| lung | 17 / 336974 | 50 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 29 / 107715 | 269 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 8 / 214812 | 37 | |
| parathyroid | 3 / 20539 | 146 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 8 / 280825 | 28 | |
| prostate | 5 / 189345 | 26 | |
| salivary gland | 12 / 20155 | 595 | |
| skin | 5 / 210574 | 23 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 2 / 96619 | 20 | |
| testis | 47 / 330442 | 142 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 6 / 232878 | 25 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: CUST_292_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.15 ± 0.46 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.85 ± 0.24 | |
| Basal Part of Pons | 5.46 ± 0.33 | |
| Cerebellar Cortex | 5.47 ± 0.26 | |
| Cerebellar Nuclei | 6.4 ± 0.53 | |
| Claustrum | 5.99 ± 0.47 | |
| Epithalamus | 5.75 ± 0.57 | |
| Frontal Lobe | 5.84 ± 0.45 | |
| Globus Pallidus | 6.9 ± 0.34 | |
| Hypothalamus | 5.93 ± 0.55 | |
| Insula | 5.71 ± 0.37 | |
| Limbic Lobe | 5.98 ± 0.44 | |
| Mesencephalon | 6 ± 0.44 | |
| Myelencephalon | 5.94 ± 0.48 | |
| Occipital Lobe | 5.98 ± 0.38 | |
| Parietal Lobe | 5.81 ± 0.42 | |
| Pontine Tegmentum | 6.13 ± 0.33 | |
| Striatum | 6.54 ± 0.44 | |
| Subthalamus | 5.77 ± 0.26 | |
| Temporal Lobe | 5.76 ± 0.38 | |
| Thalamus | 5.91 ± 0.36 | |
| White Matter | 7.27 ± 0.31 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 4930469P12Rik | CB | Cerebellum | 6.54 | |
| 6.96 | | |||
| 4930469P12Rik | CTX | Cerebral cortex | 1.57 | |
| 1.33 | | |||
| 4930469P12Rik | HIP | Hippocampal region | 1 | |
| 0.88 | | |||
| 4930469P12Rik | HPF | Hippocampal formation | 0.96 | |
| 0.8 | | |||
| 4930469P12Rik | HY | Hypothalamus | 1.34 | |
| 0.99 | | |||
| 4930469P12Rik | LSX | Lateral septal complex | 3.4 | |
| 4.31 | | |||
| 4930469P12Rik | MB | Midbrain | 1.56 | |
| 1.61 | | |||
| 4930469P12Rik | MY | Medulla | 8.38 | |
| 9.37 | | |||
| 4930469P12Rik | OLF | Olfactory bulb | 3 | |
| 2 | | |||
| 4930469P12Rik | P | Pons | 4.52 | |
| 5.06 | | |||
| 4930469P12Rik | PAL | Pallidum | 3.19 | |
| 2.69 | | |||
| 4930469P12Rik | RHP | Retrohippocampal region | 0.93 | |
| 0.73 | | |||
| 4930469P12Rik | sAMY | Striatum-like amygdalar nuclei | 0.97 | |
| 0.61 | | |||
| 4930469P12Rik | STR | Striatum | 1.9 | |
| 1.34 | | |||
| 4930469P12Rik | STRd | Striatum dorsal region | 1.86 | |
| 1.23 | | |||
| 4930469P12Rik | STRv | Striatum ventral region | 2.25 | |
| 1.29 | | |||
| 4930469P12Rik | TH | Thalamus | 1.59 | |
| 1.29 | |