Annotation Detail for KRT80
Basic Information Top
| Gene Symbol: | KRT80 ( KB20 ) |
|---|---|
| Gene Full Name: | keratin 80 |
| Band: | 12q13.13 |
| Quick Links | Entrez ID:144501; OMIM: 611161; Uniprot ID:K2C80_HUMAN; ENSEMBL ID: ENSG00000167767; HGNC ID: 27056 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.140978
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 1 / 564012 | 1 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 51 / 1939121 | 26 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 7 / 94178 | 74 |  |
| cervical tumor | 4 / 34366 | 116 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 10 / 114246 | 87 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 1 / 136302 | 7 |  |
| kidney tumor | 5 / 68959 | 72 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 13 / 103127 | 126 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 36 / 3360307 | 10 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 6 / 102680 | 58 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 6 / 90257 | 66 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 1 / 1100989 | 0 | |
| cervix | 6 / 48171 | 124 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 1 / 89626 | 11 | |
| intestine | 10 / 234472 | 42 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 14 / 336974 | 41 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 14 / 153271 | 91 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 13 / 214812 | 60 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 6 / 189345 | 31 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 5 / 210574 | 23 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 6 / 232878 | 25 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_24_P349264
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.19 ± 1.04 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.73 ± 0.22 | |
| Basal Part of Pons | 1.44 ± 0.41 | |
| Cerebellar Cortex | 1.65 ± 0.74 | |
| Cerebellar Nuclei | 2.06 ± 0.72 | |
| Claustrum | 2.58 ± 0.82 | |
| Epithalamus | 1.47 ± 0.75 | |
| Frontal Lobe | 1.62 ± 0.63 | |
| Globus Pallidus | 2.4 ± 0.31 | |
| Hypothalamus | 1.81 ± 0.64 | |
| Insula | 1.59 ± 0.54 | |
| Limbic Lobe | 1.78 ± 0.68 | |
| Mesencephalon | 1.93 ± 0.72 | |
| Myelencephalon | 1.8 ± 0.67 | |
| Occipital Lobe | 1.94 ± 0.93 | |
| Parietal Lobe | 1.83 ± 0.8 | |
| Pontine Tegmentum | 1.81 ± 0.66 | |
| Striatum | 1.87 ± 0.5 | |
| Subthalamus | 1.88 ± 0.65 | |
| Temporal Lobe | 1.63 ± 0.64 | |
| Thalamus | 1.8 ± 0.67 | |
| White Matter | 2.23 ± 0.27 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Krt80 | CB | Cerebellum | 34.16 | |
| 56.11 | | |||
| Krt80 | CTX | Cerebral cortex | 25.06 | |
| 20.4 | | |||
| Krt80 | HIP | Hippocampal region | 15.23 | |
| 15.28 | | |||
| Krt80 | HPF | Hippocampal formation | 18.38 | |
| 16.25 | | |||
| Krt80 | HY | Hypothalamus | 1.94 | |
| 1.47 | | |||
| Krt80 | LSX | Lateral septal complex | 0.21 | |
| 0.15 | | |||
| Krt80 | MB | Midbrain | 5.94 | |
| 5.78 | | |||
| Krt80 | MY | Medulla | 7.9 | |
| 8.1 | | |||
| Krt80 | OLF | Olfactory bulb | 22.86 | |
| 17.74 | | |||
| Krt80 | P | Pons | 8.09 | |
| 7.88 | | |||
| Krt80 | PAL | Pallidum | 4.45 | |
| 3.89 | | |||
| Krt80 | RHP | Retrohippocampal region | 24.04 | |
| 17.84 | | |||
| Krt80 | sAMY | Striatum-like amygdalar nuclei | 16.01 | |
| 11.42 | | |||
| Krt80 | STR | Striatum | 13.14 | |
| 9.39 | | |||
| Krt80 | STRd | Striatum dorsal region | 8.25 | |
| 6.1 | | |||
| Krt80 | STRv | Striatum ventral region | 7.76 | |
| 4.83 | | |||
| Krt80 | TH | Thalamus | 4.87 | |
| 3.65 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00044639 | 11 | 374 | 384 | LALDIEIATYR | Peptide Atlas |