Annotation Detail for B3GALTL
Basic Information Top
| Gene Symbol: | B3GALTL ( B3GLCT,B3GTL,B3Glc-T,Gal-T,beta3Glc-T ) |
|---|---|
| Gene Full Name: | beta 1,3-galactosyltransferase-like |
| Band: | 13q12.3 |
| Quick Links | Entrez ID:145173; OMIM: 610308; Uniprot ID:B3GLT_HUMAN; ENSEMBL ID: ENSG00000187676; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.13205
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 3 / 62319 | 48 | |
| fetus | 16 / 564012 | 28 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 26 / 1939121 | 13 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 4 / 96359 | 41 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 65 / 3360307 | 19 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 11 / 1100989 | 9 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 3 / 16212 | 185 |  |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 7 / 211054 | 33 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 0 / 24145 | 0 | |
| liver | 4 / 207743 | 19 | |
| lung | 3 / 336974 | 8 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 3 / 280825 | 10 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 10 / 330442 | 30 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_32_P85835
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.53 ± 0.82 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.95 ± 0.57 | |
| Basal Part of Pons | 7.28 ± 0.37 | |
| Cerebellar Cortex | 4.96 ± 0.44 | |
| Cerebellar Nuclei | 5.55 ± 0.47 | |
| Claustrum | 6.19 ± 0.94 | |
| Epithalamus | 7.13 ± 0.47 | |
| Frontal Lobe | 6.16 ± 0.65 | |
| Globus Pallidus | 5 ± 0.93 | |
| Hypothalamus | 5.85 ± 0.8 | |
| Insula | 6 ± 0.58 | |
| Limbic Lobe | 5.27 ± 0.76 | |
| Mesencephalon | 5.45 ± 0.77 | |
| Myelencephalon | 5.92 ± 0.94 | |
| Occipital Lobe | 6.16 ± 0.66 | |
| Parietal Lobe | 5.69 ± 0.75 | |
| Pontine Tegmentum | 5.64 ± 0.73 | |
| Striatum | 7.48 ± 0.76 | |
| Subthalamus | 6.58 ± 0.23 | |
| Temporal Lobe | 5.71 ± 0.59 | |
| Thalamus | 6.95 ± 0.76 | |
| White Matter | 4.75 ± 0.98 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| B3galtl | CB | Cerebellum | 25.57 | |
| 35.9 | | |||
| B3galtl | CTX | Cerebral cortex | 67.46 | |
| 58.46 | | |||
| B3galtl | HIP | Hippocampal region | 32.08 | |
| 49.17 | | |||
| B3galtl | HPF | Hippocampal formation | 29.58 | |
| 37.78 | | |||
| B3galtl | HY | Hypothalamus | 40.92 | |
| 37.88 | | |||
| B3galtl | LSX | Lateral septal complex | 26.63 | |
| 20.59 | | |||
| B3galtl | MB | Midbrain | 39.37 | |
| 37.92 | | |||
| B3galtl | MY | Medulla | 23.08 | |
| 25.83 | | |||
| B3galtl | OLF | Olfactory bulb | 52.08 | |
| 48.67 | | |||
| B3galtl | P | Pons | 26.74 | |
| 30.79 | | |||
| B3galtl | PAL | Pallidum | 54.82 | |
| 55.52 | | |||
| B3galtl | RHP | Retrohippocampal region | 24.83 | |
| 21.67 | | |||
| B3galtl | sAMY | Striatum-like amygdalar nuclei | 61.29 | |
| 49.33 | | |||
| B3galtl | STR | Striatum | 46.31 | |
| 37.51 | | |||
| B3galtl | STRd | Striatum dorsal region | 43.54 | |
| 35.02 | | |||
| B3galtl | STRv | Striatum ventral region | 54.4 | |
| 43.87 | | |||
| B3galtl | TH | Thalamus | 69.42 | |
| 67.56 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00133422 | 23 | 160 | 182 | ALHDEEATIIHHYAFSENPTVFK | Peptide Atlas |