Annotation Detail for LYSMD4
Basic Information Top
| Gene Symbol: | LYSMD4 ( FLJ33008,MGC99501 ) |
|---|---|
| Gene Full Name: | LysM, putative peptidoglycan-binding, domain containing 4 |
| Band: | 15q26.3 |
| Quick Links | Entrez ID:145748; OMIM: NA; Uniprot ID:LYSM4_HUMAN; ENSEMBL ID: ENSG00000183060; HGNC ID: 26571 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.562568
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 12 / 564012 | 21 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 23 / 1939121 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 |  |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 2 / 17290 | 115 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 62 / 3360307 | 18 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 23 / 1100989 | 20 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 2 / 20209 | 98 | |
| eye | 4 / 211054 | 18 | |
| heart | 0 / 89626 | 0 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 4 / 336974 | 11 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 6 / 91610 | 65 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 7 / 280825 | 24 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 1 / 96619 | 10 | |
| testis | 4 / 330442 | 12 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_2262_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.89 ± 0.98 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.28 ± 0.39 | |
| Basal Part of Pons | 3.34 ± 0.37 | |
| Cerebellar Cortex | 3.79 ± 0.49 | |
| Cerebellar Nuclei | 3.71 ± 0.66 | |
| Claustrum | 4.05 ± 0.69 | |
| Epithalamus | 3.04 ± 0.82 | |
| Frontal Lobe | 3.54 ± 0.58 | |
| Globus Pallidus | 2.77 ± 0.57 | |
| Hypothalamus | 3.43 ± 0.75 | |
| Insula | 3.41 ± 0.74 | |
| Limbic Lobe | 3.62 ± 0.7 | |
| Mesencephalon | 3.7 ± 0.66 | |
| Myelencephalon | 3.61 ± 0.69 | |
| Occipital Lobe | 4.37 ± 0.77 | |
| Parietal Lobe | 3.76 ± 0.62 | |
| Pontine Tegmentum | 3.66 ± 0.74 | |
| Striatum | 2.99 ± 0.74 | |
| Subthalamus | 3.69 ± 0.45 | |
| Temporal Lobe | 3.61 ± 0.66 | |
| Thalamus | 3.85 ± 0.63 | |
| White Matter | 2.74 ± 0.53 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Lysmd4 | CB | Cerebellum | 7.54 | |
| 7.84 | | |||
| Lysmd4 | CTX | Cerebral cortex | 17.1 | |
| 11.11 | | |||
| Lysmd4 | HIP | Hippocampal region | 19.37 | |
| 17.8 | | |||
| Lysmd4 | HPF | Hippocampal formation | 19.47 | |
| 16.29 | | |||
| Lysmd4 | HY | Hypothalamus | 3.26 | |
| 2.24 | | |||
| Lysmd4 | LSX | Lateral septal complex | 1.65 | |
| 1.05 | | |||
| Lysmd4 | MB | Midbrain | 2.34 | |
| 2.08 | | |||
| Lysmd4 | MY | Medulla | 1.36 | |
| 1.54 | | |||
| Lysmd4 | OLF | Olfactory bulb | 22.63 | |
| 17.05 | | |||
| Lysmd4 | P | Pons | 2.22 | |
| 2.47 | | |||
| Lysmd4 | PAL | Pallidum | 2.68 | |
| 2 | | |||
| Lysmd4 | RHP | Retrohippocampal region | 20.09 | |
| 14.44 | | |||
| Lysmd4 | sAMY | Striatum-like amygdalar nuclei | 4.61 | |
| 2.93 | | |||
| Lysmd4 | STR | Striatum | 3.29 | |
| 2.24 | | |||
| Lysmd4 | STRd | Striatum dorsal region | 2.84 | |
| 2.04 | | |||
| Lysmd4 | STRv | Striatum ventral region | 4.58 | |
| 2.85 | | |||
| Lysmd4 | TH | Thalamus | 6.14 | |
| 6.95 | |