Annotation Detail for RLTPR
Basic Information Top
| Gene Symbol: | RLTPR ( CARMIL2,CARMIL2b,LRRC16C ) |
|---|---|
| Gene Full Name: | RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing |
| Band: | 16q22.1 |
| Quick Links | Entrez ID:146206; OMIM: 610859; Uniprot ID:LR16C_HUMAN; ENSEMBL ID: ENSG00000159753; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.611432
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 3 / 62319 | 48 |  |
| fetus | 12 / 564012 | 21 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 19 / 1939121 | 9 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 2 / 263845 | 7 | |
| glioma | 5 / 106883 | 46 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 20 / 95842 | 208 |  |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 5 / 103127 | 48 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 51 / 3360307 | 15 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 5 / 125680 | 39 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 4 / 123478 | 32 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 15 / 1100989 | 13 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 1 / 211054 | 4 | |
| heart | 0 / 89626 | 0 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 9 / 336974 | 26 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 12 / 91610 | 130 |  |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_908_PI416573500
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.41 ± 0.58 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.92 ± 0.23 | |
| Basal Part of Pons | 5.93 ± 0.31 | |
| Cerebellar Cortex | 5.64 ± 0.41 | |
| Cerebellar Nuclei | 4.67 ± 0.55 | |
| Claustrum | 5.51 ± 0.66 | |
| Epithalamus | 4.25 ± 0.7 | |
| Frontal Lobe | 5.38 ± 0.55 | |
| Globus Pallidus | 3.69 ± 0.68 | |
| Hypothalamus | 4.83 ± 0.48 | |
| Insula | 5.23 ± 0.5 | |
| Limbic Lobe | 5.8 ± 0.6 | |
| Mesencephalon | 5 ± 0.53 | |
| Myelencephalon | 5.26 ± 0.67 | |
| Occipital Lobe | 5.2 ± 0.44 | |
| Parietal Lobe | 5.35 ± 0.52 | |
| Pontine Tegmentum | 5.11 ± 0.55 | |
| Striatum | 4.81 ± 0.51 | |
| Subthalamus | 5 ± 0.31 | |
| Temporal Lobe | 5.49 ± 0.48 | |
| Thalamus | 5.05 ± 0.46 | |
| White Matter | 3.01 ± 0.36 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| D130029J02Rik | CB | Cerebellum | 32.37 | |
| 40.05 | | |||
| D130029J02Rik | CTX | Cerebral cortex | 45.06 | |
| 41.35 | | |||
| D130029J02Rik | HIP | Hippocampal region | 32.69 | |
| 51.32 | | |||
| D130029J02Rik | HPF | Hippocampal formation | 29.96 | |
| 39.06 | | |||
| D130029J02Rik | HY | Hypothalamus | 13.09 | |
| 13.04 | | |||
| D130029J02Rik | LSX | Lateral septal complex | 3.16 | |
| 3.8 | | |||
| D130029J02Rik | MB | Midbrain | 20.92 | |
| 23.61 | | |||
| D130029J02Rik | MY | Medulla | 32.13 | |
| 44.9 | | |||
| D130029J02Rik | OLF | Olfactory bulb | 22.21 | |
| 20.01 | | |||
| D130029J02Rik | P | Pons | 25.51 | |
| 37.39 | | |||
| D130029J02Rik | PAL | Pallidum | 9.88 | |
| 11.56 | | |||
| D130029J02Rik | RHP | Retrohippocampal region | 25.86 | |
| 23.94 | | |||
| D130029J02Rik | sAMY | Striatum-like amygdalar nuclei | 9.46 | |
| 8.38 | | |||
| D130029J02Rik | STR | Striatum | 7.7 | |
| 6.89 | | |||
| D130029J02Rik | STRd | Striatum dorsal region | 6.33 | |
| 5.69 | | |||
| D130029J02Rik | STRv | Striatum ventral region | 13.03 | |
| 10.75 | | |||
| D130029J02Rik | TH | Thalamus | 18.07 | |
| 21.54 | |